Detailed information NTG0056652

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOK310_RS06450
• Genome accession: NC_020509
• Coordinates: 1325394..1326449 (-)
• Length: 351 a.a.
• NCBI ID: WP_015429417.1
• Uniprot ID: -
• Organism: Helicobacter pylori OK310
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1320394..1331449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOK310_RS06430 (HPOK310_1235)	-	1320943..1322355 (-)	1413	WP_015429413.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOK310_RS06435 (HPOK310_1236)	comB10	1322422..1323558 (-)	1137	WP_015429414.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOK310_RS06440 (HPOK310_1237)	comB9	1323551..1324513 (-)	963	WP_015429415.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOK310_RS06445 (HPOK310_1238)	comB8	1324513..1325256 (-)	744	WP_015429416.1	type IV secretion system protein	Machinery gene
HPOK310_RS08065	comB7	1325253..1325378 (-)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
HPOK310_RS06450 (HPOK310_1239)	comB6	1325394..1326449 (-)	1056	WP_015429417.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOK310_RS06455 (HPOK310_1240)	-	1326457..1327461 (-)	1005	WP_015429418.1	PDZ domain-containing protein	-
HPOK310_RS06460 (HPOK310_1241)	-	1327461..1327754 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPOK310_RS06465 (HPOK310_1242)	panD	1327765..1328115 (-)	351	WP_000142213.1	aspartate 1-decarboxylase	-
HPOK310_RS06470 (HPOK310_1243)	-	1328105..1330327 (-)	2223	WP_015429419.1	AAA family ATPase	-
HPOK310_RS06475 (HPOK310_1244)	-	1330327..1330602 (-)	276	WP_015429420.1	ATP-dependent Clp protease adaptor ClpS	-
HPOK310_RS06480 (HPOK310_1245)	-	1330622..1331035 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39917.91 Da
• Isoelectric Point: 8.8165

>NTDB_id=56652 HPOK310_RS06450 WP_015429417.1 1325394..1326449(-) (comB6) [Helicobacter pylori OK310]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNMSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSISTSMRESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=56652 HPOK310_RS06450 WP_015429417.1 1325394..1326449(-) (comB6) [Helicobacter pylori OK310]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTTGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACATGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGTGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTTGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCTGCTTCTTCTAGCATTTCTACTTCTATGAGAGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974