Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOK310_RS00090 Genome accession   NC_020509
Coordinates   13732..14013 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori OK310     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8732..19013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS00070 (HPOK310_0009) groES 9310..9666 (-) 357 WP_000671946.1 co-chaperone GroES -
  HPOK310_RS00075 (HPOK310_0010) dnaG 9941..11620 (+) 1680 WP_015428477.1 DNA primase -
  HPOK310_RS00080 (HPOK310_0011) - 11617..12669 (+) 1053 WP_015428478.1 MnmA/TRMU family protein -
  HPOK310_RS00085 (HPOK310_0012) - 12760..13587 (+) 828 WP_015428479.1 DUF5718 family protein -
  HPOK310_RS00090 (HPOK310_0013) comB2 13732..14013 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOK310_RS00095 (HPOK310_0014) comB3 14013..14276 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  HPOK310_RS00100 (HPOK310_0015) comB4 14278..16641 (+) 2364 WP_015428480.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOK310_RS00105 (HPOK310_0016) - 16871..18301 (+) 1431 WP_162470971.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=56636 HPOK310_RS00090 WP_001272686.1 13732..14013(+) (comB2) [Helicobacter pylori OK310]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=56636 HPOK310_RS00090 WP_001272686.1 13732..14013(+) (comB2) [Helicobacter pylori OK310]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment