Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOK310_RS00210 Genome accession   NC_020509
Coordinates   40513..41826 (+) Length   437 a.a.
NCBI ID   WP_015428499.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35513..46826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS07820 (HPOK310_0033) - 35522..35746 (+) 225 Protein_32 restriction endonuclease -
  HPOK310_RS00190 (HPOK310_0034) crdR 35833..36474 (+) 642 WP_001169803.1 copper response regulator transcription factor CrdR -
  HPOK310_RS00195 (HPOK310_0035) crdS 36440..37642 (+) 1203 WP_080032120.1 copper-sensing histidine kinase CrdS -
  HPOK310_RS00200 (HPOK310_0036) - 37645..39039 (+) 1395 WP_015428497.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOK310_RS00205 (HPOK310_0037) - 39050..40516 (+) 1467 WP_015428498.1 replicative DNA helicase -
  HPOK310_RS00210 (HPOK310_0038) comEC/comE3 40513..41826 (+) 1314 WP_015428499.1 ComEC/Rec2 family competence protein Machinery gene
  HPOK310_RS00215 (HPOK310_0039) mqnP 41855..42739 (+) 885 WP_015428500.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOK310_RS00220 (HPOK310_0040) - 42732..43226 (+) 495 WP_015428501.1 hypothetical protein -
  HPOK310_RS00225 (HPOK310_0041) - 43239..43742 (+) 504 WP_000953083.1 DUF6115 domain-containing protein -
  HPOK310_RS00230 (HPOK310_0042) - 43739..44545 (+) 807 WP_015428502.1 phosphatidylserine decarboxylase -
  HPOK310_RS00235 (HPOK310_0043) nadA 44532..45542 (+) 1011 WP_015428503.1 quinolinate synthase NadA -
  HPOK310_RS00240 (HPOK310_0044) nadC 45542..46363 (+) 822 WP_015428504.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50177.19 Da        Isoelectric Point: 9.8515

>NTDB_id=56640 HPOK310_RS00210 WP_015428499.1 40513..41826(+) (comEC/comE3) [Helicobacter pylori OK310]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLILNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHLSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLN
ALIFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=56640 HPOK310_RS00210 WP_015428499.1 40513..41826(+) (comEC/comE3) [Helicobacter pylori OK310]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAATACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTTAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGAGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAAC
GCGCTAATTTTTTTGAACATGCTCATCGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCCACAATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment