Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOK310_RS00095 Genome accession   NC_020509
Coordinates   14013..14276 (+) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori OK310     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9013..19276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS00070 (HPOK310_0009) groES 9310..9666 (-) 357 WP_000671946.1 co-chaperone GroES -
  HPOK310_RS00075 (HPOK310_0010) dnaG 9941..11620 (+) 1680 WP_015428477.1 DNA primase -
  HPOK310_RS00080 (HPOK310_0011) - 11617..12669 (+) 1053 WP_015428478.1 MnmA/TRMU family protein -
  HPOK310_RS00085 (HPOK310_0012) - 12760..13587 (+) 828 WP_015428479.1 DUF5718 family protein -
  HPOK310_RS00090 (HPOK310_0013) comB2 13732..14013 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPOK310_RS00095 (HPOK310_0014) comB3 14013..14276 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  HPOK310_RS00100 (HPOK310_0015) comB4 14278..16641 (+) 2364 WP_015428480.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOK310_RS00105 (HPOK310_0016) - 16871..18301 (+) 1431 WP_162470971.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=56637 HPOK310_RS00095 WP_000584953.1 14013..14276(+) (comB3) [Helicobacter pylori OK310]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=56637 HPOK310_RS00095 WP_000584953.1 14013..14276(+) (comB3) [Helicobacter pylori OK310]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment