Detailed information NTG0056629

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOK113_RS06685
• Genome accession: NC_020508
• Coordinates: 1375005..1375970 (-)
• Length: 321 a.a.
• NCBI ID: WP_015428294.1
• Uniprot ID: -
• Organism: Helicobacter pylori OK113
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1370005..1380970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOK113_RS06665 (HPOK113_1297)	-	1370309..1371241 (-)	933	WP_001002438.1	GDP-L-fucose synthase family protein	-
HPOK113_RS06670 (HPOK113_1298)	gmd	1371234..1372379 (-)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
HPOK113_RS06675 (HPOK113_1299)	-	1372394..1373806 (-)	1413	WP_015428292.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOK113_RS06680 (HPOK113_1300)	comB10	1373876..1375012 (-)	1137	WP_015428293.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOK113_RS06685 (HPOK113_1301)	comB9	1375005..1375970 (-)	966	WP_015428294.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOK113_RS06690 (HPOK113_1302)	comB8	1375970..1376713 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
HPOK113_RS06695	comB7	1376710..1376835 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPOK113_RS06700 (HPOK113_1303)	comB6	1376851..1377906 (-)	1056	WP_015428295.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOK113_RS06705 (HPOK113_1304)	-	1377912..1378907 (-)	996	WP_015428296.1	PDZ domain-containing protein	-
HPOK113_RS06710 (HPOK113_1305)	-	1378907..1379200 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPOK113_RS06715 (HPOK113_1306)	panD	1379211..1379561 (-)	351	WP_015428297.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36823.44 Da
• Isoelectric Point: 9.3714

>NTDB_id=56629 HPOK113_RS06685 WP_015428294.1 1375005..1375970(-) (comB9) [Helicobacter pylori OK113]
MRKVLCALVGFLLVSSALKADDFLEEANETSPANLNHPMQDLNAIQGIFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=56629 HPOK113_RS06685 WP_015428294.1 1375005..1375970(-) (comB9) [Helicobacter pylori OK113]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACATCCCCAGCAAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGATCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGTTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGCAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931