Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPOK113_RS06690 Genome accession   NC_020508
Coordinates   1375970..1376713 (-) Length   247 a.a.
NCBI ID   WP_000660529.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370970..1381713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS06670 (HPOK113_1298) gmd 1371234..1372379 (-) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -
  HPOK113_RS06675 (HPOK113_1299) - 1372394..1373806 (-) 1413 WP_015428292.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOK113_RS06680 (HPOK113_1300) comB10 1373876..1375012 (-) 1137 WP_015428293.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOK113_RS06685 (HPOK113_1301) comB9 1375005..1375970 (-) 966 WP_015428294.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOK113_RS06690 (HPOK113_1302) comB8 1375970..1376713 (-) 744 WP_000660529.1 type IV secretion system protein Machinery gene
  HPOK113_RS06695 comB7 1376710..1376835 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  HPOK113_RS06700 (HPOK113_1303) comB6 1376851..1377906 (-) 1056 WP_015428295.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOK113_RS06705 (HPOK113_1304) - 1377912..1378907 (-) 996 WP_015428296.1 PDZ domain-containing protein -
  HPOK113_RS06710 (HPOK113_1305) - 1378907..1379200 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  HPOK113_RS06715 (HPOK113_1306) panD 1379211..1379561 (-) 351 WP_015428297.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=56630 HPOK113_RS06690 WP_000660529.1 1375970..1376713(-) (comB8) [Helicobacter pylori OK113]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=56630 HPOK113_RS06690 WP_000660529.1 1375970..1376713(-) (comB8) [Helicobacter pylori OK113]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment