Detailed information NTG0056632

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOK113_RS06700
• Genome accession: NC_020508
• Coordinates: 1376851..1377906 (-)
• Length: 351 a.a.
• NCBI ID: WP_015428295.1
• Uniprot ID: -
• Organism: Helicobacter pylori OK113
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1371851..1382906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOK113_RS06675 (HPOK113_1299)	-	1372394..1373806 (-)	1413	WP_015428292.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOK113_RS06680 (HPOK113_1300)	comB10	1373876..1375012 (-)	1137	WP_015428293.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOK113_RS06685 (HPOK113_1301)	comB9	1375005..1375970 (-)	966	WP_015428294.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOK113_RS06690 (HPOK113_1302)	comB8	1375970..1376713 (-)	744	WP_000660529.1	type IV secretion system protein	Machinery gene
HPOK113_RS06695	comB7	1376710..1376835 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPOK113_RS06700 (HPOK113_1303)	comB6	1376851..1377906 (-)	1056	WP_015428295.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOK113_RS06705 (HPOK113_1304)	-	1377912..1378907 (-)	996	WP_015428296.1	PDZ domain-containing protein	-
HPOK113_RS06710 (HPOK113_1305)	-	1378907..1379200 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPOK113_RS06715 (HPOK113_1306)	panD	1379211..1379561 (-)	351	WP_015428297.1	aspartate 1-decarboxylase	-
HPOK113_RS06720 (HPOK113_1307)	-	1379551..1381773 (-)	2223	WP_015428298.1	AAA family ATPase	-
HPOK113_RS06725 (HPOK113_1308)	-	1381773..1382048 (-)	276	WP_015428299.1	ATP-dependent Clp protease adaptor ClpS	-
HPOK113_RS06730 (HPOK113_1309)	-	1382068..1382481 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39785.74 Da
• Isoelectric Point: 8.8165

>NTDB_id=56632 HPOK113_RS06700 WP_015428295.1 1376851..1377906(-) (comB6) [Helicobacter pylori OK113]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISASTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=56632 HPOK113_RS06700 WP_015428295.1 1376851..1377906(-) (comB6) [Helicobacter pylori OK113]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTGCAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTGCTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969