Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPOK113_RS06680 Genome accession   NC_020508
Coordinates   1373876..1375012 (-) Length   378 a.a.
NCBI ID   WP_015428293.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368876..1380012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS06660 (HPOK113_1296) hypE 1369059..1370057 (+) 999 WP_000378822.1 hydrogenase expression/formation protein HypE -
  HPOK113_RS06665 (HPOK113_1297) - 1370309..1371241 (-) 933 WP_001002438.1 GDP-L-fucose synthase family protein -
  HPOK113_RS06670 (HPOK113_1298) gmd 1371234..1372379 (-) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -
  HPOK113_RS06675 (HPOK113_1299) - 1372394..1373806 (-) 1413 WP_015428292.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOK113_RS06680 (HPOK113_1300) comB10 1373876..1375012 (-) 1137 WP_015428293.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOK113_RS06685 (HPOK113_1301) comB9 1375005..1375970 (-) 966 WP_015428294.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOK113_RS06690 (HPOK113_1302) comB8 1375970..1376713 (-) 744 WP_000660529.1 type IV secretion system protein Machinery gene
  HPOK113_RS06695 comB7 1376710..1376835 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  HPOK113_RS06700 (HPOK113_1303) comB6 1376851..1377906 (-) 1056 WP_015428295.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOK113_RS06705 (HPOK113_1304) - 1377912..1378907 (-) 996 WP_015428296.1 PDZ domain-containing protein -
  HPOK113_RS06710 (HPOK113_1305) - 1378907..1379200 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  HPOK113_RS06715 (HPOK113_1306) panD 1379211..1379561 (-) 351 WP_015428297.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42215.83 Da        Isoelectric Point: 9.9398

>NTDB_id=56628 HPOK113_RS06680 WP_015428293.1 1373876..1375012(-) (comB10) [Helicobacter pylori OK113]
MNKWIKGALIFVGGFATIVTISLIYHQKPKVPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLRQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLFSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=56628 HPOK113_RS06680 WP_015428293.1 1373876..1375012(-) (comB10) [Helicobacter pylori OK113]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGAGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGTCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAGGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTTCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGTTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

94.709

100

0.947

Multiple sequence alignment