Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IS508_RS12025 Genome accession   NZ_CP074695
Coordinates   2490136..2490462 (-) Length   108 a.a.
NCBI ID   WP_114889875.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2474169..2495112 2490136..2490462 within 0
IScluster/Tn 2488180..2489345 2490136..2490462 flank 791


Gene organization within MGE regions


Location: 2474169..2495112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS11965 - 2474169..2475515 (+) 1347 WP_001046209.1 OprD family outer membrane porin -
  IS508_RS11970 - 2476162..2476446 (+) 285 WP_000675273.1 hypothetical protein -
  IS508_RS11975 - 2476727..2477029 (+) 303 WP_000020972.1 hypothetical protein -
  IS508_RS11980 - 2477034..2477984 (-) 951 WP_000998814.1 hypothetical protein -
  IS508_RS11985 - 2478375..2479238 (-) 864 WP_000109893.1 DNA adenine methylase -
  IS508_RS11990 - 2479303..2481024 (-) 1722 WP_000203259.1 AAA family ATPase -
  IS508_RS11995 - 2483057..2483995 (-) 939 WP_001043732.1 hypothetical protein -
  IS508_RS12000 - 2485183..2485872 (-) 690 WP_279446718.1 hypothetical protein -
  IS508_RS12005 - 2486520..2487626 (+) 1107 WP_114889874.1 hypothetical protein -
  IS508_RS12010 - 2487634..2488083 (+) 450 WP_032023364.1 hypothetical protein -
  IS508_RS12020 - 2489362..2490057 (+) 696 WP_279472729.1 hypothetical protein -
  IS508_RS12025 ssb 2490136..2490462 (-) 327 WP_114889875.1 single-stranded DNA-binding protein Machinery gene
  IS508_RS12030 - 2490795..2493260 (-) 2466 WP_114889876.1 DUF927 domain-containing protein -
  IS508_RS12035 - 2493273..2493551 (-) 279 WP_001064707.1 hypothetical protein -
  IS508_RS12040 - 2493679..2493981 (-) 303 Protein_2361 hypothetical protein -
  IS508_RS12045 - 2493991..2494359 (-) 369 WP_001046481.1 hypothetical protein -
  IS508_RS12050 - 2494352..2494906 (-) 555 WP_001988245.1 BRO family protein -
  IS508_RS12055 - 2494903..2495112 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12182.90 Da        Isoelectric Point: 10.3517

>NTDB_id=565798 IS508_RS12025 WP_114889875.1 2490136..2490462(-) (ssb) [Acinetobacter baumannii strain X4-107]
MPNVKKVTVMGVLGLNPETKQFSNGGSITTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYSEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=565798 IS508_RS12025 WP_114889875.1 2490136..2490462(-) (ssb) [Acinetobacter baumannii strain X4-107]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CATTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAACGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATAGCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.852

100

0.519
  ssb Neisseria gonorrhoeae MS11

47.17

98.148

0.463
  ssb Neisseria meningitidis MC58

47.17

98.148

0.463
  ssb Vibrio cholerae strain A1552

49.485

89.815

0.444