Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KIJ28_RS21905 Genome accession   NZ_CP074578
Coordinates   4964083..4964649 (-) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae strain Susan2139     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4959083..4969649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIJ28_RS21880 (KIJ28_21880) - 4959338..4960231 (+) 894 WP_057406092.1 ABC transporter permease subunit -
  KIJ28_RS21885 (KIJ28_21885) ugpC 4960228..4961334 (+) 1107 WP_004394159.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  KIJ28_RS21890 (KIJ28_21890) - 4961341..4962102 (+) 762 WP_003317090.1 glycerophosphoryl diester phosphodiesterase -
  KIJ28_RS21895 (KIJ28_21895) - 4962099..4962842 (+) 744 WP_003317091.1 inositol monophosphatase family protein -
  KIJ28_RS21900 (KIJ28_21900) - 4962842..4963954 (+) 1113 WP_058445242.1 endo-1,4-beta-xylanase -
  KIJ28_RS21905 (KIJ28_21905) ssb 4964083..4964649 (-) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  KIJ28_RS21910 (KIJ28_21910) - 4964659..4966053 (-) 1395 WP_003426593.1 MFS transporter -
  KIJ28_RS21915 (KIJ28_21915) uvrA 4966183..4969017 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  KIJ28_RS21920 (KIJ28_21920) bfr 4969112..4969576 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=565414 KIJ28_RS21905 WP_003317093.1 4964083..4964649(-) (ssb) [Pseudomonas syringae strain Susan2139]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=565414 KIJ28_RS21905 WP_003317093.1 4964083..4964649(-) (ssb) [Pseudomonas syringae strain Susan2139]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAGCAAGGTCAGGGCGGCGGAAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGTCCACAACAGTCAGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTCGATAGCTTTGATGATGATATTCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447