Detailed information NTG0565395

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KIJ28_RS03290
• Genome accession: NZ_CP074578
• Coordinates: 749248..750585 (-)
• Length: 445 a.a.
• NCBI ID: WP_074955982.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain Susan2139
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 744248..755585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIJ28_RS03275 (KIJ28_03275)	-	744367..747570 (+)	3204	WP_213581836.1	PilC/PilY family type IV pilus protein	-
KIJ28_RS03280 (KIJ28_03280)	-	747582..747989 (+)	408	WP_046266217.1	type IV pilin protein	-
KIJ28_RS03285 (KIJ28_03285)	thiO	748015..749118 (+)	1104	WP_046266216.1	glycine oxidase ThiO	-
KIJ28_RS03290 (KIJ28_03290)	pilR	749248..750585 (-)	1338	WP_074955982.1	sigma-54 dependent transcriptional regulator	Regulator
KIJ28_RS03295 (KIJ28_03295)	pilS	750588..752180 (-)	1593	WP_016567133.1	ATP-binding protein	Regulator
KIJ28_RS03300 (KIJ28_03300)	-	752170..752409 (-)	240	WP_032607804.1	PP0621 family protein	-
KIJ28_RS03305 (KIJ28_03305)	-	752529..753551 (-)	1023	WP_003344571.1	outer membrane protein assembly factor BamD	-
KIJ28_RS03310 (KIJ28_03310)	rluD	753701..754663 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KIJ28_RS03315 (KIJ28_03315)	pgeF	754660..755388 (+)	729	WP_213568004.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49655.57 Da
• Isoelectric Point: 6.2986

>NTDB_id=565395 KIJ28_RS03290 WP_074955982.1 749248..750585(-) (pilR) [Pseudomonas syringae strain Susan2139]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRVDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=565395 KIJ28_RS03290 WP_074955982.1 749248..750585(-) (pilR) [Pseudomonas syringae strain Susan2139]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCGTCGACAAGCCGTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGGCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	76.975	99.551	0.766
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375