Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHX94_RS11630 Genome accession   NZ_CP074572
Coordinates   2426398..2427063 (+) Length   221 a.a.
NCBI ID   WP_213680762.1    Uniprot ID   -
Organism   Shewanella dokdonensis strain DSM 23626     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2421398..2432063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHX94_RS11615 (KHX94_11610) - 2422629..2423519 (-) 891 WP_213680761.1 LysR family transcriptional regulator -
  KHX94_RS11620 (KHX94_11615) - 2423628..2424742 (+) 1115 Protein_2327 NADH:flavin oxidoreductase/NADH oxidase -
  KHX94_RS11625 (KHX94_11620) - 2424995..2426360 (+) 1366 Protein_2328 MFS transporter -
  KHX94_RS11630 (KHX94_11625) ssb 2426398..2427063 (+) 666 WP_213680762.1 single-stranded DNA-binding protein Machinery gene
  KHX94_RS11635 (KHX94_11630) - 2427819..2428151 (-) 333 WP_213680763.1 multidrug efflux SMR transporter -
  KHX94_RS11640 (KHX94_11635) - 2429180..2429734 (+) 555 WP_213680764.1 hypothetical protein -
  KHX94_RS11645 (KHX94_11640) - 2429770..2430222 (+) 453 WP_213680765.1 DUF3800 domain-containing protein -
  KHX94_RS11650 (KHX94_11645) - 2430252..2430875 (+) 624 WP_213680766.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24311.61 Da        Isoelectric Point: 5.2240

>NTDB_id=565354 KHX94_RS11630 WP_213680762.1 2426398..2427063(+) (ssb) [Shewanella dokdonensis strain DSM 23626]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSDTWKDQQGQQQERTEWHRVVIFGKLAEVAGEYLRKGSQVYLE
GRLQTRKWKDQGGQDRYTTEVVIDMQGSMQMLGGRQQNQGGAPAQGGNMGGGYTAPQGGNQYAAPQQSQPQYAAPQPSAP
QYNAPQQAAPAYQQPQQNSGYAPKPQSQQRPAPQPQQQPQQQPQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 666 bp        

>NTDB_id=565354 KHX94_RS11630 WP_213680762.1 2426398..2427063(+) (ssb) [Shewanella dokdonensis strain DSM 23626]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTCTGGTAGGCAATCTGGGGCAGGACCCCGAAGTGCGCTATATGCCAAACGG
CAATGCTGTAGCAAATATCACCGTGGCGACCAGTGATACCTGGAAGGATCAGCAGGGACAGCAACAGGAACGTACCGAGT
GGCATCGTGTGGTCATCTTCGGCAAGCTGGCTGAAGTGGCCGGGGAATATCTGCGTAAAGGTTCGCAAGTATATCTGGAA
GGTCGCCTGCAAACCCGTAAGTGGAAGGATCAAGGTGGTCAGGATCGCTACACTACCGAGGTGGTTATCGATATGCAGGG
TAGCATGCAGATGCTGGGTGGTCGTCAGCAGAATCAAGGTGGCGCACCAGCGCAGGGCGGTAATATGGGCGGTGGTTATA
CTGCGCCTCAGGGCGGTAATCAGTATGCTGCTCCACAGCAATCCCAGCCACAGTACGCGGCACCACAGCCGTCAGCACCG
CAGTACAATGCTCCGCAACAGGCGGCTCCGGCTTATCAACAGCCACAGCAGAACAGTGGTTATGCGCCTAAACCGCAATC
GCAGCAGCGCCCTGCACCACAACCTCAGCAGCAACCACAACAGCAGCCACAGCAGAATTACACACCAGATCTGGATGATG
GCTGGGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.896

78.281

0.516
  ssb Glaesserella parasuis strain SC1401

45.872

98.643

0.452
  ssb Neisseria gonorrhoeae MS11

43.981

97.738

0.43
  ssb Neisseria meningitidis MC58

49.708

77.376

0.385