Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LILO_RS11240 Genome accession   NC_020450
Coordinates   2334219..2334719 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2329219..2339719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS11215 (lilo_2156) gnd 2330281..2331186 (-) 906 WP_042230655.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  LILO_RS11220 (lilo_2157) - 2331551..2332399 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  LILO_RS11225 (lilo_2158) - 2332437..2332745 (+) 309 WP_015427205.1 DUF960 domain-containing protein -
  LILO_RS11230 (lilo_2159) - 2332827..2333600 (-) 774 WP_015427206.1 metallophosphoesterase -
  LILO_RS11235 (lilo_2160) rpsR 2333800..2334045 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  LILO_RS11240 (lilo_2161) ssb 2334219..2334719 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  LILO_RS11245 (lilo_2162) rpsF 2334749..2335042 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  LILO_RS11250 (lilo_2163) - 2335234..2336088 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  LILO_RS11255 (lilo_2164) - 2336471..2336686 (+) 216 WP_080619335.1 lactococcin family bacteriocin -
  LILO_RS11260 (lilo_2165) - 2336695..2336976 (+) 282 WP_015427208.1 hypothetical protein -
  LILO_RS11265 (lilo_2166) - 2337574..2339040 (+) 1467 WP_017865200.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=56500 LILO_RS11240 WP_003131953.1 2334219..2334719(-) (ssb) [Lactococcus lactis subsp. lactis IO-1]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=56500 LILO_RS11240 WP_003131953.1 2334219..2334719(-) (ssb) [Lactococcus lactis subsp. lactis IO-1]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373

Multiple sequence alignment