Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHW13_RS21970 Genome accession   NZ_CP074411
Coordinates   5126651..5127205 (-) Length   184 a.a.
NCBI ID   WP_074908396.1    Uniprot ID   -
Organism   Pseudomonas syringae strain Susan762     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5121651..5132205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW13_RS21960 (KHW13_21960) - 5123599..5125218 (-) 1620 WP_213567698.1 tyrosine-type recombinase/integrase -
  KHW13_RS21965 (KHW13_21965) - 5125211..5126440 (-) 1230 WP_213567699.1 site-specific integrase -
  KHW13_RS21970 (KHW13_21970) ssb 5126651..5127205 (-) 555 WP_074908396.1 single-stranded DNA-binding protein Machinery gene
  KHW13_RS21975 (KHW13_21975) - 5127215..5128609 (-) 1395 WP_074908395.1 MFS transporter -
  KHW13_RS21980 (KHW13_21980) uvrA 5128739..5131573 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  KHW13_RS21985 (KHW13_21985) bfr 5131668..5132132 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20462.57 Da        Isoelectric Point: 5.9404

>NTDB_id=564726 KHW13_RS21970 WP_074908396.1 5126651..5127205(-) (ssb) [Pseudomonas syringae strain Susan762]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDS
RPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=564726 KHW13_RS21970 WP_074908396.1 5126651..5127205(-) (ssb) [Pseudomonas syringae strain Susan762]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAACCAGCAGCCGCCACAACAGCGCGACTCG
CGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.135

100

0.554
  ssb Glaesserella parasuis strain SC1401

48.649

100

0.489
  ssb Neisseria meningitidis MC58

45.355

99.457

0.451
  ssb Neisseria gonorrhoeae MS11

45.355

99.457

0.451