Detailed information NTG0564710

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KHW13_RS03560
• Genome accession: NZ_CP074411
• Coordinates: 802651..803523 (-)
• Length: 290 a.a.
• NCBI ID: WP_096134051.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain Susan762
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 797651..808523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHW13_RS03530 (KHW13_03530)	-	798435..799733 (-)	1299	WP_003392712.1	NAD(P)/FAD-dependent oxidoreductase	-
KHW13_RS25645	-	799829..800065 (-)	237	WP_327397062.1	DUF3094 family protein	-
KHW13_RS03535 (KHW13_03535)	-	799950..800483 (-)	534	WP_213568008.1	MOSC domain-containing protein	-
KHW13_RS03540 (KHW13_03540)	-	800480..801109 (-)	630	WP_003345130.1	DUF1780 domain-containing protein	-
KHW13_RS03545 (KHW13_03545)	-	801237..801698 (+)	462	WP_213568009.1	hypothetical protein	-
KHW13_RS03550 (KHW13_03550)	yacG	801825..802034 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
KHW13_RS03555 (KHW13_03555)	coaE	802031..802654 (-)	624	WP_004415092.1	dephospho-CoA kinase	-
KHW13_RS03560 (KHW13_03560)	pilD	802651..803523 (-)	873	WP_096134051.1	A24 family peptidase	Machinery gene
KHW13_RS03565 (KHW13_03565)	pilC	803525..804742 (-)	1218	WP_096134052.1	type II secretion system F family protein	Machinery gene
KHW13_RS03570 (KHW13_03570)	pilB	804745..806439 (-)	1695	WP_096134053.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHW13_RS03575 (KHW13_03575)	-	806665..807060 (+)	396	WP_096134054.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32083.33 Da
• Isoelectric Point: 8.3734

>NTDB_id=564710 KHW13_RS03560 WP_096134051.1 802651..803523(-) (pilD) [Pseudomonas syringae strain Susan762]
MPLLDLLASSPLAFVITCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAMLSAYVAWHFGFGWQAAAMLVLSWGLLTMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=564710 KHW13_RS03560 WP_096134051.1 802651..803523(-) (pilD) [Pseudomonas syringae strain Susan762]
ATGCCCCTCCTAGACCTCTTGGCCAGCTCACCGCTGGCCTTCGTCATTACCTGCTGCATTCTCGGCCTGATCATCGGAAG
CTTCCTCAATGTGGTCGTCTACCGCCTCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAACCCGTCTTCAATCTGAATCGTCCCCGTTCCAGCTGCCCGCATTGCGCGCACAAAATCCGC
CCGTGGGAGAACCTGCCGGTGATCAGCTATCTGCTACTGCGTGGCAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCAATGTTGTCGGCCTACGTAGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGCGG
CGATGCTGGTTTTGAGCTGGGGCCTGCTGACGATGAGTCTGATCGATGCCGATCACCAGTTACTCCCTGACTCTCTGGTG
CTGCCACTGCTGTGGCTAGGCCTCATAGTCAACGCTTTCGGGCTGTTCACATCGCTGAACGATGCGCTTTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACAGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTCGGGGTGATCATGATGCGCGTGCGTAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.004	97.586	0.517
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472