Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHW15_RS23370 Genome accession   NZ_CP074410
Coordinates   5408643..5409209 (-) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae strain U643     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5403643..5414209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW15_RS23350 (KHW15_23350) - 5404013..5405581 (-) 1569 WP_249682974.1 asparagine synthase-related protein -
  KHW15_RS23355 (KHW15_23355) - 5405672..5405857 (-) 186 WP_139218885.1 hypothetical protein -
  KHW15_RS23360 (KHW15_23360) - 5406060..5407817 (+) 1758 WP_213568916.1 ABC transporter ATP-binding protein -
  KHW15_RS23365 (KHW15_23365) - 5407948..5408391 (-) 444 WP_024682568.1 hypothetical protein -
  KHW15_RS23370 (KHW15_23370) ssb 5408643..5409209 (-) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  KHW15_RS23375 (KHW15_23375) - 5409219..5410613 (-) 1395 WP_003426593.1 MFS transporter -
  KHW15_RS23380 (KHW15_23380) uvrA 5410743..5413577 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  KHW15_RS23385 (KHW15_23385) bfr 5413672..5414136 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=564696 KHW15_RS23370 WP_003317093.1 5408643..5409209(-) (ssb) [Pseudomonas syringae strain U643]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=564696 KHW15_RS23370 WP_003317093.1 5408643..5409209(-) (ssb) [Pseudomonas syringae strain U643]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCTC
GTCCACAGCAGTCGCGTCCACAACAGTCAGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447