Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHW12_RS22975 Genome accession   NZ_CP074409
Coordinates   5321528..5322094 (-) Length   188 a.a.
NCBI ID   WP_003317093.1    Uniprot ID   A0A0P9GWC5
Organism   Pseudomonas syringae strain KF529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5316528..5327094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW12_RS22945 (KHW12_22940) - 5316807..5317919 (+) 1113 WP_032662509.1 endo-1,4-beta-xylanase -
  KHW12_RS22950 (KHW12_22945) - 5318345..5318649 (-) 305 Protein_4540 transposase -
  KHW12_RS22955 (KHW12_22950) - 5318863..5319633 (-) 771 WP_229636589.1 nucleotidyltransferase domain-containing protein -
  KHW12_RS26580 - 5319639..5319863 (-) 225 WP_010417339.1 nucleotidyltransferase domain-containing protein -
  KHW12_RS22960 (KHW12_22955) - 5319860..5320810 (-) 951 WP_032662507.1 phosphotransferase -
  KHW12_RS22965 (KHW12_22960) - 5320803..5321234 (-) 432 WP_003391805.1 hypothetical protein -
  KHW12_RS22970 (KHW12_22965) - 5321301..5321516 (+) 216 WP_213627070.1 hypothetical protein -
  KHW12_RS22975 (KHW12_22970) ssb 5321528..5322094 (-) 567 WP_003317093.1 single-stranded DNA-binding protein Machinery gene
  KHW12_RS22980 (KHW12_22975) - 5322104..5323498 (-) 1395 WP_010438218.1 MFS transporter -
  KHW12_RS22985 (KHW12_22980) uvrA 5323628..5326462 (+) 2835 WP_003317094.1 excinuclease ABC subunit UvrA -
  KHW12_RS22990 (KHW12_22985) bfr 5326557..5327021 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20917.05 Da        Isoelectric Point: 5.9404

>NTDB_id=564667 KHW12_RS22975 WP_003317093.1 5321528..5322094(-) (ssb) [Pseudomonas syringae strain KF529]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=564667 KHW12_RS22975 WP_003317093.1 5321528..5322094(-) (ssb) [Pseudomonas syringae strain KF529]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACGACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P9GWC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.473
  ssb Neisseria meningitidis MC58

44.92

99.468

0.447
  ssb Neisseria gonorrhoeae MS11

44.92

99.468

0.447