Detailed information NTG0564529

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: MCS25_RS02225
• Genome accession: NZ_CP092048
• Coordinates: 528308..529339 (+)
• Length: 343 a.a.
• NCBI ID: WP_043890392.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis strain W50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 523308..534339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MCS25_RS02200 (MCS25_02200)	coaE	523325..523933 (-)	609	WP_005873860.1	dephospho-CoA kinase	-
MCS25_RS02205 (MCS25_02205)	-	523940..524947 (-)	1008	WP_005873848.1	YbbR-like domain-containing protein	-
MCS25_RS02210 (MCS25_02210)	yajC	525075..525413 (-)	339	WP_004585014.1	preprotein translocase subunit YajC	-
MCS25_RS02215 (MCS25_02215)	-	525496..526008 (-)	513	WP_043876405.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
MCS25_RS02220 (MCS25_02220)	-	526365..527522 (-)	1158	WP_010955941.1	IS4-like element IS1598 family transposase	-
MCS25_RS02225 (MCS25_02225)	ruvB	528308..529339 (+)	1032	WP_043890392.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MCS25_RS02230 (MCS25_02230)	-	529362..530867 (+)	1506	WP_043876406.1	lipopolysaccharide biosynthesis protein	-
MCS25_RS10330	-	531147..531545 (+)	399	Protein_442	DUF389 domain-containing protein	-
MCS25_RS10335	-	531521..531658 (-)	138	WP_369073473.1	zinc-finger domain-containing protein	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37739.97 Da
• Isoelectric Point: 5.8564

>NTDB_id=564529 MCS25_RS02225 WP_043890392.1 528308..529339(+) (ruvB) [Porphyromonas gingivalis strain W50]
MTEEFDIRQERYRGNDGEREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANE
LGVGLKITSGPVLDKPGDLAGLLTSLESNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMLDKGPSARSIQINLSPFTLV
GATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEVSCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKG
SGAIDKPIACYALEALNIDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGR
EVTELAYTHLGRNPRPHRPSLFD

Nucleotide

• Length: 1032 bp

>NTDB_id=564529 MCS25_RS02225 WP_043890392.1 528308..529339(+) (ruvB) [Porphyromonas gingivalis strain W50]
ATGACTGAAGAATTTGACATTAGACAGGAGCGTTACCGCGGCAACGACGGCGAACGGGAAGTCGAAAACAAGCTACGCCC
CCTGACGTTCGACAGCTTTAGCGGTCAGGACAAGGTGGTGGAGAATCTGAGCATCTTCGTTGCTGCAGCTCGTTTGCGCG
GCGAGGCCTTGGATCATACGCTGCTGCATGGCCCTCCGGGGCTGGGTAAGACCACGTTGTCGAATATCATAGCCAATGAG
CTTGGCGTGGGGCTTAAGATCACTTCCGGTCCCGTCCTCGACAAGCCGGGTGATTTGGCCGGACTCCTCACTTCGTTGGA
ATCCAACGATGTACTTTTCATAGACGAAATACACCGGCTGAGCCCTGTAGTGGAAGAATATCTCTACTCGGCCATGGAGG
ACTACCGTATAGATATAATGCTGGACAAGGGACCCAGCGCGCGCTCCATTCAGATCAATCTCTCCCCCTTCACCCTTGTG
GGAGCTACTACGCGCAGCGGTTTGCTGACGGCACCCCTTCGCGCCCGTTTCGGGATCAATCTTCATCTGGAGTATTACGA
TGTGCATACTATTACCGGTATCGTGGAGCGGAGTGCACGCATTCTGGAGGTGTCCTGTTCGCACGATGCTGCCGTAGAGA
TAGCGGGACGAAGCCGTGGTACGCCTCGTATAGCCAATGCCTTGCTGCGACGTGTAAGGGACTTTGCACAAGTCAAGGGA
TCCGGTGCCATTGACAAACCGATAGCCTGCTATGCTCTCGAAGCCCTGAATATCGACCGCTACGGACTGGACAATGTGGA
TCACAAGCTCCTCGCCACCATCATAGACAAGTTCGCCGGAGGCCCCGTCGGATTGAGCACCATTGCCACGGCCTTGGGGG
AAGACCCCGGTACGATAGAGGAGGTCTATGAGCCATTCCTGATCAAGGAGGGATTCCTCAAGCGGACACCTCGCGGAAGA
GAAGTGACGGAGCTGGCTTATACGCACTTGGGACGTAATCCCCGTCCGCACCGGCCATCCCTCTTCGACTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

• RuvB AAA lid domain (AAA_lid_4) (186-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.675	92.42	0.542
ruvB	Streptococcus pneumoniae TIGR4	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae R6	58.28	91.545	0.534
ruvB	Streptococcus pneumoniae D39	58.28	91.545	0.534
ruvB	Synechocystis sp. PCC 6803	52.439	95.627	0.501
ruvB	Helicobacter pylori 26695	50.325	89.796	0.452