Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHA79_RS06640 Genome accession   NZ_CP074364
Coordinates   1545905..1546432 (+) Length   175 a.a.
NCBI ID   WP_039005431.1    Uniprot ID   A0A514EAW3
Organism   Xanthomonas translucens pv. cerealis strain CFBP 2541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1540905..1551432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA79_RS06625 (KHA79_06605) murD 1542052..1543482 (+) 1431 WP_039005435.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  KHA79_RS06630 (KHA79_06610) - 1543697..1544494 (+) 798 WP_039005434.1 dienelactone hydrolase family protein -
  KHA79_RS06635 (KHA79_06615) - 1544715..1545713 (-) 999 WP_039005432.1 polyprenyl synthetase family protein -
  KHA79_RS06640 (KHA79_06620) ssb 1545905..1546432 (+) 528 WP_039005431.1 single-stranded DNA-binding protein Machinery gene
  KHA79_RS06645 (KHA79_06625) - 1546715..1547053 (-) 339 WP_039005429.1 hypothetical protein -
  KHA79_RS06650 (KHA79_06630) - 1547050..1547415 (-) 366 WP_230812569.1 helix-turn-helix domain-containing protein -
  KHA79_RS06655 (KHA79_06635) - 1547828..1549792 (+) 1965 WP_039005426.1 OPT family oligopeptide transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18813.75 Da        Isoelectric Point: 5.3242

>NTDB_id=564287 KHA79_RS06640 WP_039005431.1 1545905..1546432(+) (ssb) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGAGMGGDRPQRAAAPRQERPNQGGGAQGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=564287 KHA79_RS06640 WP_039005431.1 1545905..1546432(+) (ssb) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTATGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGCCGCGAAGGCGGCGGTGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCTGCCGCGCCGCGCCAGG
AACGCCCGAACCAGGGCGGCGGCGCGCAGGGCGGCGGTGGCCAGGATTATGCGCCGCGCCGGCAGCAGCCGGCGCCGCAG
CAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514EAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.263

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.474
  ssb Neisseria meningitidis MC58

45.604

100

0.474