Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BAM5036_RS16265 Genome accession   NC_020410
Coordinates   3372144..3373307 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis UCMB5036     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367144..3378307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS16235 (BAM5036_3181) - 3367409..3367828 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  BAM5036_RS16240 (BAM5036_3182) comFC 3367902..3368591 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  BAM5036_RS16245 (BAM5036_3183) - 3368597..3368881 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAM5036_RS16250 (BAM5036_3184) comFA 3368939..3370324 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  BAM5036_RS16255 (BAM5036_3185) - 3370432..3371280 (-) 849 WP_015418336.1 DegV family protein -
  BAM5036_RS16260 (BAM5036_3186) degU 3371378..3372067 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAM5036_RS16265 (BAM5036_3187) degS 3372144..3373307 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAM5036_RS16270 (BAM5036_3188) - 3373530..3374177 (+) 648 WP_003151384.1 YigZ family protein -
  BAM5036_RS16275 (BAM5036_3189) - 3374182..3375396 (+) 1215 WP_015418337.1 LCP family protein -
  BAM5036_RS16280 (BAM5036_3190) - 3375486..3376562 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  BAM5036_RS16285 (BAM5036_3191) tuaH 3376695..3377891 (-) 1197 WP_015418338.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=56404 BAM5036_RS16265 WP_007407484.1 3372144..3373307(-) (degS) [Bacillus velezensis UCMB5036]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=56404 BAM5036_RS16265 WP_007407484.1 3372144..3373307(-) (degS) [Bacillus velezensis UCMB5036]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment