Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAM5036_RS16250 Genome accession   NC_020410
Coordinates   3368939..3370324 (-) Length   461 a.a.
NCBI ID   WP_015418335.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3363939..3375324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS16215 (BAM5036_3177) flgL 3364114..3365031 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  BAM5036_RS16220 (BAM5036_3178) flgK 3365043..3366560 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  BAM5036_RS16225 (BAM5036_3179) - 3366576..3367058 (-) 483 WP_015418332.1 flagellar protein FlgN -
  BAM5036_RS16230 (BAM5036_3180) flgM 3367073..3367339 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAM5036_RS16235 (BAM5036_3181) - 3367409..3367828 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  BAM5036_RS16240 (BAM5036_3182) comFC 3367902..3368591 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  BAM5036_RS16245 (BAM5036_3183) - 3368597..3368881 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAM5036_RS16250 (BAM5036_3184) comFA 3368939..3370324 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  BAM5036_RS16255 (BAM5036_3185) - 3370432..3371280 (-) 849 WP_015418336.1 DegV family protein -
  BAM5036_RS16260 (BAM5036_3186) degU 3371378..3372067 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAM5036_RS16265 (BAM5036_3187) degS 3372144..3373307 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAM5036_RS16270 (BAM5036_3188) - 3373530..3374177 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.94 Da        Isoelectric Point: 10.1838

>NTDB_id=56402 BAM5036_RS16250 WP_015418335.1 3368939..3370324(-) (comFA) [Bacillus velezensis UCMB5036]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVVMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=56402 BAM5036_RS16250 WP_015418335.1 3368939..3370324(-) (comFA) [Bacillus velezensis UCMB5036]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment