Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAM5036_RS16260 Genome accession   NC_020410
Coordinates   3371378..3372067 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis UCMB5036     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3366378..3377067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS16225 (BAM5036_3179) - 3366576..3367058 (-) 483 WP_015418332.1 flagellar protein FlgN -
  BAM5036_RS16230 (BAM5036_3180) flgM 3367073..3367339 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAM5036_RS16235 (BAM5036_3181) - 3367409..3367828 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  BAM5036_RS16240 (BAM5036_3182) comFC 3367902..3368591 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  BAM5036_RS16245 (BAM5036_3183) - 3368597..3368881 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAM5036_RS16250 (BAM5036_3184) comFA 3368939..3370324 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  BAM5036_RS16255 (BAM5036_3185) - 3370432..3371280 (-) 849 WP_015418336.1 DegV family protein -
  BAM5036_RS16260 (BAM5036_3186) degU 3371378..3372067 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAM5036_RS16265 (BAM5036_3187) degS 3372144..3373307 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAM5036_RS16270 (BAM5036_3188) - 3373530..3374177 (+) 648 WP_003151384.1 YigZ family protein -
  BAM5036_RS16275 (BAM5036_3189) - 3374182..3375396 (+) 1215 WP_015418337.1 LCP family protein -
  BAM5036_RS16280 (BAM5036_3190) - 3375486..3376562 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=56403 BAM5036_RS16260 WP_003219701.1 3371378..3372067(-) (degU) [Bacillus velezensis UCMB5036]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=56403 BAM5036_RS16260 WP_003219701.1 3371378..3372067(-) (degU) [Bacillus velezensis UCMB5036]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment