Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BAM5036_RS16240 Genome accession   NC_020410
Coordinates   3367902..3368591 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362902..3373591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS16205 (BAM5036_3175) fliW 3362993..3363424 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  BAM5036_RS16210 (BAM5036_3176) - 3363454..3364023 (-) 570 WP_007407476.1 DUF6470 family protein -
  BAM5036_RS16215 (BAM5036_3177) flgL 3364114..3365031 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  BAM5036_RS16220 (BAM5036_3178) flgK 3365043..3366560 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  BAM5036_RS16225 (BAM5036_3179) - 3366576..3367058 (-) 483 WP_015418332.1 flagellar protein FlgN -
  BAM5036_RS16230 (BAM5036_3180) flgM 3367073..3367339 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAM5036_RS16235 (BAM5036_3181) - 3367409..3367828 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  BAM5036_RS16240 (BAM5036_3182) comFC 3367902..3368591 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  BAM5036_RS16245 (BAM5036_3183) - 3368597..3368881 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAM5036_RS16250 (BAM5036_3184) comFA 3368939..3370324 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  BAM5036_RS16255 (BAM5036_3185) - 3370432..3371280 (-) 849 WP_015418336.1 DegV family protein -
  BAM5036_RS16260 (BAM5036_3186) degU 3371378..3372067 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAM5036_RS16265 (BAM5036_3187) degS 3372144..3373307 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=56401 BAM5036_RS16240 WP_196493397.1 3367902..3368591(-) (comFC) [Bacillus velezensis UCMB5036]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=56401 BAM5036_RS16240 WP_196493397.1 3367902..3368591(-) (comFC) [Bacillus velezensis UCMB5036]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment