Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   KGI96_RS08420 Genome accession   NZ_CP074346
Coordinates   1749434..1749784 (+) Length   116 a.a.
NCBI ID   WP_211597248.1    Uniprot ID   A0AAW8CNL3
Organism   Pasteurella atlantica strain NVI-9100     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1744434..1754784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGI96_RS08400 (KGI96_08400) ubiB 1744571..1746193 (-) 1623 WP_211597252.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  KGI96_RS08405 (KGI96_08405) rfaC 1746183..1747175 (-) 993 WP_213156432.1 lipopolysaccharide heptosyltransferase RfaC -
  KGI96_RS08410 (KGI96_08410) waaF 1747172..1748212 (-) 1041 WP_211597250.1 lipopolysaccharide heptosyltransferase II -
  KGI96_RS08415 (KGI96_08415) - 1748268..1749197 (-) 930 WP_211597249.1 LysM-like peptidoglycan-binding domain-containing protein -
  KGI96_RS08420 (KGI96_08420) comEA/comE1 1749434..1749784 (+) 351 WP_211597248.1 helix-hairpin-helix domain-containing protein Machinery gene
  KGI96_RS08425 (KGI96_08425) hemG 1749895..1750428 (-) 534 WP_211597247.1 menaquinone-dependent protoporphyrinogen IX dehydrogenase -
  KGI96_RS08430 (KGI96_08430) murJ 1750428..1751999 (-) 1572 WP_211597246.1 murein biosynthesis integral membrane protein MurJ -
  KGI96_RS08435 (KGI96_08435) rpsT 1752232..1752495 (+) 264 WP_090919987.1 30S ribosomal protein S20 -
  KGI96_RS08440 (KGI96_08440) mscL 1752565..1752963 (+) 399 WP_211597245.1 large-conductance mechanosensitive channel protein MscL -
  KGI96_RS08445 (KGI96_08445) xerC 1753003..1753923 (+) 921 WP_211597244.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12618.71 Da        Isoelectric Point: 10.7574

>NTDB_id=564005 KGI96_RS08420 WP_211597248.1 1749434..1749784(+) (comEA/comE1) [Pasteurella atlantica strain NVI-9100]
MKVLKVCGFGLLLGLLTTTVTAKENSNTNHQPTKNNQQLAVKKVTTVKTNLNAVNINTATAAELKDKLSGIGIKKAQAIV
EYRQKNGKFLTVEQITEVSGIGKATLEKNRERILVN

Nucleotide


Download         Length: 351 bp        

>NTDB_id=564005 KGI96_RS08420 WP_211597248.1 1749434..1749784(+) (comEA/comE1) [Pasteurella atlantica strain NVI-9100]
ATGAAAGTATTAAAAGTCTGTGGATTTGGATTATTATTAGGTTTATTGACCACAACGGTTACTGCCAAAGAAAACTCAAA
TACAAATCACCAACCAACAAAGAATAATCAACAACTTGCTGTAAAAAAAGTAACCACTGTAAAAACTAATTTAAATGCAG
TAAATATTAACACAGCTACTGCGGCTGAATTAAAAGATAAATTATCTGGCATTGGGATAAAAAAAGCACAAGCTATTGTT
GAATATCGTCAAAAAAATGGTAAATTCTTGACTGTGGAGCAAATTACGGAGGTTTCTGGTATTGGTAAAGCGACATTAGA
AAAAAATCGGGAGCGAATTCTAGTCAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(50-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.829

100

0.603
  comEA Acinetobacter baylyi ADP1

40.336

100

0.414
  comEA Acinetobacter baumannii D1279779

38.655

100

0.397
  comEA Acinetobacter baumannii strain A118

37.815

100

0.388