Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KGI96_RS08070 Genome accession   NZ_CP074346
Coordinates   1672263..1673336 (-) Length   357 a.a.
NCBI ID   WP_211599087.1    Uniprot ID   A0AAW8CPK3
Organism   Pasteurella atlantica strain NVI-9100     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667263..1678336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGI96_RS08040 (KGI96_08040) srmB 1667819..1669150 (-) 1332 WP_211599081.1 ATP-dependent RNA helicase SrmB -
  KGI96_RS08045 (KGI96_08045) - 1669259..1669879 (-) 621 WP_211599082.1 LysE family transporter -
  KGI96_RS08050 (KGI96_08050) - 1669899..1670372 (-) 474 WP_211599083.1 phosphatidylglycerophosphatase A -
  KGI96_RS08055 (KGI96_08055) thiL 1670394..1671347 (-) 954 WP_211599084.1 thiamine-phosphate kinase -
  KGI96_RS08060 (KGI96_08060) nusB 1671358..1671771 (-) 414 WP_211599085.1 transcription antitermination factor NusB -
  KGI96_RS08065 (KGI96_08065) - 1672003..1672209 (-) 207 WP_211599086.1 hypothetical protein -
  KGI96_RS08070 (KGI96_08070) comE 1672263..1673336 (-) 1074 WP_211599087.1 type IV pilus secretin PilQ Machinery gene
  KGI96_RS08075 (KGI96_08075) - 1673341..1673844 (-) 504 WP_211599088.1 hypothetical protein -
  KGI96_RS08080 (KGI96_08080) - 1673847..1674359 (-) 513 WP_211599089.1 hypothetical protein -
  KGI96_RS08085 (KGI96_08085) - 1674341..1675084 (-) 744 WP_211599090.1 hypothetical protein -
  KGI96_RS08090 (KGI96_08090) - 1675194..1677773 (+) 2580 WP_211599091.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39577.37 Da        Isoelectric Point: 6.1039

>NTDB_id=564004 KGI96_RS08070 WP_211599087.1 1672263..1673336(-) (comE) [Pasteurella atlantica strain NVI-9100]
MKKLVLLMCLFFSCYIYADPFYKEKEIMDNKVTVEEYNIDESEPDIVDKEGLVKSIHLNYARAKDIIESLTKGQGTLLDG
GYIHFDQQTNTLILKGSNQILNKLTALVKKLDKPIRQVAIEARVVTISSEHLQELGVRWGMFSPTANSHQFGGKLEGNGF
SANNLNVNFPVVSNAASAVIQIASLNNRLLDLELTALEQENSVEIIASPSLITTNENKASIKQGTEVAYPQRNAKGDITD
VEFRDAVLGLEVTPHFSQNDQILLDLLVTQNAPNTATASSQQWVTIDKQEIKTQVLAQNGKTIVLGGIFQNMLSKEKDAV
PLLGSLPILKHLFSHTKDKVAKRELVIFVTPHIINPQ

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=564004 KGI96_RS08070 WP_211599087.1 1672263..1673336(-) (comE) [Pasteurella atlantica strain NVI-9100]
ATGAAAAAGTTAGTATTATTAATGTGTTTGTTTTTTAGTTGTTATATTTATGCTGATCCTTTTTATAAAGAAAAAGAAAT
TATGGATAACAAAGTCACAGTTGAAGAATATAATATAGATGAAAGTGAACCTGATATTGTTGATAAAGAGGGTTTAGTAA
AAAGCATTCATTTAAATTATGCGAGAGCAAAAGATATTATTGAAAGTTTAACTAAAGGACAAGGAACCTTGTTAGATGGC
GGTTATATTCATTTTGATCAACAAACAAATACATTGATTTTAAAAGGAAGTAATCAGATTTTAAATAAATTAACCGCATT
AGTAAAAAAATTAGATAAACCCATTAGGCAAGTTGCTATTGAAGCAAGAGTAGTGACTATCAGTAGTGAACATTTACAAG
AATTAGGTGTTCGATGGGGAATGTTTAGTCCAACTGCGAACTCTCATCAATTTGGTGGAAAATTAGAAGGGAATGGGTTT
TCAGCAAATAATTTAAATGTTAATTTTCCAGTGGTCAGCAATGCAGCTTCTGCAGTTATTCAAATTGCGAGTTTGAACAA
TAGATTATTAGATCTAGAATTAACGGCATTAGAACAAGAAAATAGTGTGGAAATTATTGCTAGTCCAAGTTTGATTACAA
CAAATGAGAATAAAGCGAGCATTAAGCAAGGAACAGAGGTTGCTTATCCACAGCGTAATGCTAAGGGGGACATTACTGAT
GTTGAATTTCGTGATGCAGTTTTAGGGCTTGAAGTCACTCCTCATTTTTCTCAAAATGATCAAATTTTACTGGATTTATT
AGTTACTCAAAACGCACCAAATACAGCAACAGCAAGTAGTCAGCAATGGGTGACTATAGATAAACAAGAAATTAAAACTC
AGGTTTTAGCTCAAAATGGTAAAACGATTGTACTTGGAGGGATCTTTCAAAATATGCTTTCTAAGGAAAAAGATGCAGTA
CCTTTATTAGGAAGCCTACCGATATTAAAGCATTTATTTAGTCATACCAAAGATAAGGTGGCTAAACGTGAACTCGTCAT
TTTTGTCACGCCACATATAATTAATCCTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(53-117)

Bacterial type II and III secretion system protein (Secretin)

(196-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

60.261

85.994

0.518
  comE Haemophilus influenzae Rd KW20

51.863

90.196

0.468
  comE Haemophilus influenzae 86-028NP

51.242

90.196

0.462
  pilQ Vibrio campbellii strain DS40M4

42.593

90.756

0.387
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.671

88.515

0.387
  pilQ Vibrio cholerae strain A1552

43.671

88.515

0.387