Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L7H17_RS16225 Genome accession   NZ_CP091836
Coordinates   3372747..3373283 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain SWYHX138.33gt     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3367747..3378283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H17_RS16205 (L7H17_16205) aphA 3368035..3368748 (+) 714 WP_238058989.1 acid phosphatase AphA -
  L7H17_RS16210 (L7H17_16210) yjbQ 3368859..3369275 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L7H17_RS16215 (L7H17_16215) yjbR 3369279..3369635 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L7H17_RS16220 (L7H17_16220) uvrA 3369670..3372492 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L7H17_RS16225 (L7H17_16225) ssb 3372747..3373283 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L7H17_RS16230 (L7H17_16230) yjcB 3373382..3373663 (-) 282 WP_001295689.1 YjcB family protein -
  L7H17_RS16235 (L7H17_16235) pdeC 3374092..3375678 (+) 1587 WP_238058990.1 c-di-GMP phosphodiesterase PdeC -
  L7H17_RS16240 (L7H17_16240) soxS 3375681..3376004 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L7H17_RS16245 (L7H17_16245) soxR 3376090..3376554 (+) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=563668 L7H17_RS16225 WP_000168305.1 3372747..3373283(+) (ssb) [Escherichia coli strain SWYHX138.33gt]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=563668 L7H17_RS16225 WP_000168305.1 3372747..3373283(+) (ssb) [Escherichia coli strain SWYHX138.33gt]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTTGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489