Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFU63_RS20375 Genome accession   NZ_CP074042
Coordinates   4240713..4241249 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain PI6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4235713..4246249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU63_RS20355 (KFU63_20195) soxR 4237441..4237905 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KFU63_RS20360 (KFU63_20200) soxS 4237991..4238314 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KFU63_RS20365 (KFU63_20205) pdeC 4238317..4239903 (-) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  KFU63_RS20370 (KFU63_20210) yjcB 4240333..4240614 (+) 282 WP_001295689.1 YjcB family protein -
  KFU63_RS20375 (KFU63_20215) ssb 4240713..4241249 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFU63_RS20380 (KFU63_20220) uvrA 4241503..4244325 (+) 2823 WP_169004705.1 excinuclease ABC subunit UvrA -
  KFU63_RS20385 (KFU63_20225) yjbR 4244360..4244716 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KFU63_RS20390 (KFU63_20230) yjbQ 4244720..4245136 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KFU63_RS20395 (KFU63_20235) aphA 4245247..4245960 (-) 714 WP_001389200.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=562949 KFU63_RS20375 WP_000168305.1 4240713..4241249(-) (ssb) [Escherichia coli strain PI6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=562949 KFU63_RS20375 WP_000168305.1 4240713..4241249(-) (ssb) [Escherichia coli strain PI6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489