Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFU74_RS22270 Genome accession   NZ_CP074007
Coordinates   4651194..4651730 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain PD4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4638913..4675157 4651194..4651730 within 0


Gene organization within MGE regions


Location: 4638913..4675157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU74_RS22235 (KFU74_22085) yjcB 4638913..4639194 (+) 282 WP_001295689.1 YjcB family protein -
  KFU74_RS22240 (KFU74_22090) - 4639602..4640423 (+) 822 WP_001272932.1 abortive infection system antitoxin AbiGi family protein -
  KFU74_RS22245 (KFU74_22095) avs4 4640962..4645725 (-) 4764 WP_000240574.1 AVAST type 4 anti-phage nuclease Avs4 -
  KFU74_RS22250 (KFU74_22100) - 4645801..4646220 (-) 420 WP_001062122.1 hypothetical protein -
  KFU74_RS22255 (KFU74_22105) - 4646213..4648246 (-) 2034 WP_000807722.1 hypothetical protein -
  KFU74_RS22260 (KFU74_22110) - 4648263..4649801 (-) 1539 WP_013362830.1 site-specific integrase -
  KFU74_RS22265 (KFU74_22115) - 4649788..4651035 (-) 1248 WP_000414651.1 site-specific integrase -
  KFU74_RS22270 (KFU74_22120) ssb 4651194..4651730 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KFU74_RS22275 (KFU74_22125) uvrA 4651984..4654806 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  KFU74_RS22280 (KFU74_22130) yjbR 4654841..4655197 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KFU74_RS22285 (KFU74_22135) yjbQ 4655201..4655617 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KFU74_RS22290 (KFU74_22140) aphA 4655728..4656441 (-) 714 WP_001395166.1 acid phosphatase AphA -
  KFU74_RS22295 (KFU74_22145) yjbS 4656843..4657046 (+) 204 WP_001321562.1 protein YjbS -
  KFU74_RS22300 (KFU74_22150) tyrB 4657548..4658741 (-) 1194 WP_000486989.1 aromatic amino acid transaminase -
  KFU74_RS22305 (KFU74_22155) alr 4658994..4660073 (-) 1080 WP_001147328.1 alanine racemase -
  KFU74_RS22310 (KFU74_22160) dnaB 4660126..4661541 (-) 1416 WP_000918363.1 replicative DNA helicase -
  KFU74_RS22315 (KFU74_22165) qorA 4661624..4662607 (+) 984 WP_000235509.1 quinone oxidoreductase -
  KFU74_RS22320 (KFU74_22170) pspG 4662773..4663015 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  KFU74_RS22325 (KFU74_22175) dusA 4663149..4664186 (-) 1038 WP_001395164.1 tRNA dihydrouridine(20/20a) synthase DusA -
  KFU74_RS22330 (KFU74_22180) - 4664547..4665539 (-) 993 WP_000912575.1 DUF2713 family protein -
  KFU74_RS22335 (KFU74_22185) zur 4665857..4666372 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  KFU74_RS22340 (KFU74_22190) yjbJ 4666414..4666623 (-) 210 WP_001030593.1 CsbD family protein -
  KFU74_RS22345 (KFU74_22195) dinF 4666739..4668064 (-) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  KFU74_RS22350 (KFU74_22200) lexA 4668137..4668745 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  KFU74_RS22355 (KFU74_22205) dgkA 4668855..4669223 (-) 369 WP_000002907.1 diacylglycerol kinase -
  KFU74_RS22360 (KFU74_22210) plsB 4669394..4671817 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  KFU74_RS22365 (KFU74_22215) ubiA 4671972..4672844 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  KFU74_RS22370 (KFU74_22220) ubiC 4672857..4673354 (-) 498 WP_001295693.1 chorismate lyase -
  KFU74_RS22375 (KFU74_22225) - 4673577..4675157 (-) 1581 Protein_4395 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=562797 KFU74_RS22270 WP_000168305.1 4651194..4651730(-) (ssb) [Escherichia coli strain PD4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=562797 KFU74_RS22270 WP_000168305.1 4651194..4651730(-) (ssb) [Escherichia coli strain PD4]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489