Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CONE_RS03455 Genome accession   NC_020299
Coordinates   759125..759574 (-) Length   149 a.a.
NCBI ID   WP_015397353.1    Uniprot ID   -
Organism   Candidatus Kinetoplastibacterium oncopeltii TCC290E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 754125..764574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CONE_RS03435 (CONE_0129) - 754963..755556 (-) 594 WP_015397349.1 DUF502 domain-containing protein -
  CONE_RS03440 (CONE_0130) - 756108..757313 (+) 1206 WP_015397350.1 PLP-dependent aminotransferase family protein -
  CONE_RS03445 (CONE_0132) ubiA 757322..758239 (+) 918 WP_015397351.1 4-hydroxybenzoate octaprenyltransferase -
  CONE_RS03450 (CONE_0133) panB 758246..759064 (-) 819 WP_015397352.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CONE_RS03455 (CONE_0134) ssb 759125..759574 (-) 450 WP_015397353.1 single-stranded DNA-binding protein Machinery gene
  CONE_RS03460 (CONE_0135) uvrA 759798..762584 (+) 2787 WP_015397354.1 excinuclease ABC subunit UvrA -
  CONE_RS03465 (CONE_0136) aroB 762709..763794 (-) 1086 WP_015397355.1 3-dehydroquinate synthase -
  CONE_RS03470 (CONE_0137) - 763791..764426 (-) 636 WP_015397356.1 shikimate kinase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16898.04 Da        Isoelectric Point: 5.3488

>NTDB_id=56218 CONE_RS03455 WP_015397353.1 759125..759574(-) (ssb) [Candidatus Kinetoplastibacterium oncopeltii TCC290E]
MASVNKVILLGNLGRDPELRYTPEGSAICNLSIATTSQWKDRNSGERKEETEWHRVVLYNRLAEIAGEFLKKGKPVYLEG
KLKTRKWQDKDTGSDRYITEIVVDQMQMLGNKDTVVTETTGNISRQTGNISNNESNAMKISEMEDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=56218 CONE_RS03455 WP_015397353.1 759125..759574(-) (ssb) [Candidatus Kinetoplastibacterium oncopeltii TCC290E]
GTGGCATCTGTTAATAAAGTTATACTTTTAGGAAATTTAGGACGTGATCCTGAGTTGAGATATACACCTGAAGGTTCTGC
GATCTGTAACTTGTCTATAGCGACAACATCTCAGTGGAAAGATAGAAATAGTGGAGAAAGGAAAGAAGAGACTGAATGGC
ATAGAGTTGTTTTATATAATAGATTAGCAGAAATAGCAGGAGAATTTTTAAAAAAAGGAAAACCTGTATACTTGGAAGGA
AAGCTAAAAACAAGGAAATGGCAGGATAAAGATACTGGATCTGATAGATATATAACTGAAATAGTTGTTGATCAAATGCA
GATGTTAGGTAACAAGGATACAGTTGTCACTGAAACTACGGGAAACATCTCTCGTCAAACAGGAAATATTTCTAATAATG
AAAGTAATGCTATGAAAATCTCAGAAATGGAAGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.682

100

0.523
  ssb Neisseria meningitidis MC58

50.376

89.262

0.45
  ssb Glaesserella parasuis strain SC1401

59.633

73.154

0.436
  ssb Neisseria gonorrhoeae MS11

56.757

74.497

0.423

Multiple sequence alignment