Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVJ79_RS08835 Genome accession   NZ_CP091518
Coordinates   1659827..1660348 (-) Length   173 a.a.
NCBI ID   WP_003787468.1    Uniprot ID   F5S835
Organism   Kingella kingae strain 4177/66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1654827..1665348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS08810 (LVJ79_08810) - 1655296..1656183 (+) 888 WP_038314696.1 transferrin-binding protein-like solute binding protein -
  LVJ79_RS08815 (LVJ79_08815) - 1656261..1656746 (-) 486 WP_230478940.1 DUF4149 domain-containing protein -
  LVJ79_RS08820 (LVJ79_08820) - 1656837..1657622 (-) 786 WP_003787475.1 cytochrome c1 -
  LVJ79_RS08825 (LVJ79_08825) - 1657636..1658988 (-) 1353 WP_003787473.1 cytochrome b -
  LVJ79_RS08830 (LVJ79_08830) petA 1659006..1659590 (-) 585 WP_003787471.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  LVJ79_RS08835 (LVJ79_08835) ssb 1659827..1660348 (-) 522 WP_003787468.1 single-stranded DNA-binding protein Machinery gene
  LVJ79_RS08840 (LVJ79_08840) - 1660351..1661736 (-) 1386 WP_003787466.1 MFS transporter -
  LVJ79_RS08845 (LVJ79_08845) - 1661878..1663101 (-) 1224 WP_032827787.1 sugar MFS transporter -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19467.69 Da        Isoelectric Point: 6.4775

>NTDB_id=561791 LVJ79_RS08835 WP_003787468.1 1659827..1660348(-) (ssb) [Kingella kingae strain 4177/66]
MSLNKVMLIGRLGRDPETRYMPNGDAVCNFSVATSENWTDRNNGQRQERTEWHNITMYRRQAEIAAQYLRKGSQVYLEGK
IQSRKYTDKTGAERTAYDIVCDVMRMLDSKNGQQGGSSHVPYDNEYSAAPPPARQQPAPAAPASEPPVAPQRRESKPVAP
VEPVENIDEDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=561791 LVJ79_RS08835 WP_003787468.1 1659827..1660348(-) (ssb) [Kingella kingae strain 4177/66]
ATGTCATTAAATAAAGTGATGTTGATTGGACGTTTGGGGCGCGACCCCGAAACACGCTATATGCCCAATGGTGATGCAGT
GTGCAATTTTTCGGTAGCGACCAGTGAAAACTGGACAGACCGCAACAATGGTCAGCGTCAAGAACGCACCGAGTGGCACA
ATATTACGATGTATCGCCGCCAAGCCGAGATTGCCGCGCAATATTTGCGTAAGGGCAGCCAAGTGTATTTGGAAGGCAAA
ATCCAATCGCGCAAATACACCGACAAAACAGGTGCAGAACGCACCGCATACGACATTGTGTGCGATGTCATGCGTATGTT
GGACAGCAAAAACGGTCAGCAAGGTGGCAGCAGCCATGTTCCTTATGATAACGAATACAGTGCCGCACCGCCGCCAGCAC
GTCAGCAGCCTGCACCTGCCGCACCAGCCAGCGAACCGCCAGTTGCACCACAACGTCGCGAAAGTAAACCTGTTGCACCA
GTTGAACCCGTAGAAAACATTGATGAAGACATTCCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S835

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

65.193

100

0.682
  ssb Neisseria meningitidis MC58

64.088

100

0.671
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.48
  ssb Vibrio cholerae strain A1552

41.989

100

0.439