Detailed information NTG0561564

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: L3475_RS09480
• Genome accession: NZ_CP091451
• Coordinates: 1835115..1836014 (-)
• Length: 299 a.a.
• NCBI ID: WP_000904848.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 3238/09
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1830115..1841014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3475_RS09460 (L3475_09385)	rsmA	1830765..1831637 (-)	873	WP_001216856.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
L3475_RS09465 (L3475_09390)	-	1831888..1832181 (-)	294	Protein_1856	hypothetical protein	-
L3475_RS09470 (L3475_09395)	-	1832174..1832815 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
L3475_RS09475 (L3475_09400)	-	1832817..1834847 (-)	2031	WP_000825271.1	bacteriocin-associated integral membrane family protein	-
L3475_RS09480 (L3475_09405)	comR	1835115..1836014 (-)	900	WP_000904848.1	helix-turn-helix transcriptional regulator	Regulator
L3475_RS09485 (L3475_09410)	rnmV	1836086..1836646 (-)	561	WP_000660013.1	ribonuclease M5	-
L3475_RS09490 (L3475_09415)	-	1836646..1837419 (-)	774	WP_000575650.1	TatD family hydrolase	-
L3475_RS09495 (L3475_09420)	-	1837724..1838695 (-)	972	Protein_1862	DUF1542 domain-containing protein	-
L3475_RS09500 (L3475_09425)	rpmH	1838901..1839035 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
L3475_RS09505 (L3475_09430)	-	1839180..1840394 (-)	1215	WP_000666484.1	pyridoxal phosphate-dependent aminotransferase	-
L3475_RS09510 (L3475_09435)	-	1840550..1840842 (-)	293	Protein_1865	hypothetical protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35420.14 Da
• Isoelectric Point: 4.6674

>NTDB_id=561564 L3475_RS09480 WP_000904848.1 1835115..1836014(-) (comR) [Streptococcus pneumoniae strain 3238/09]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEELMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=561564 L3475_RS09480 WP_000904848.1 1835115..1836014(-) (comR) [Streptococcus pneumoniae strain 3238/09]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATATCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAGAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	37.755	98.328	0.371
comR	Streptococcus pyogenes MGAS8232	36.577	99.666	0.365
comR	Streptococcus pyogenes MGAS315	36	100	0.361
comR	Streptococcus suis P1/7	37.113	97.324	0.361
comR	Streptococcus suis 05ZYH33	37.113	97.324	0.361