Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   L3X15_RS04950 Genome accession   NZ_CP091423
Coordinates   1006950..1007630 (+) Length   226 a.a.
NCBI ID   WP_023370011.1    Uniprot ID   -
Organism   Streptococcus suis strain LSM29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1001950..1012630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X15_RS04935 (L3X15_04935) - 1002464..1003447 (-) 984 WP_002935259.1 L-lactate dehydrogenase -
  L3X15_RS04940 (L3X15_04940) gyrA 1003636..1006080 (+) 2445 WP_024383712.1 DNA gyrase subunit A -
  L3X15_RS04945 (L3X15_04945) - 1006087..1006836 (+) 750 WP_023370009.1 class A sortase -
  L3X15_RS04950 (L3X15_04950) radC 1006950..1007630 (+) 681 WP_023370011.1 RadC family protein Machinery gene
  L3X15_RS04955 (L3X15_04955) - 1007627..1008319 (-) 693 WP_023370013.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  L3X15_RS04960 (L3X15_04960) - 1008323..1008961 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  L3X15_RS04965 (L3X15_04965) - 1009096..1009299 (-) 204 WP_002940737.1 DUF4649 family protein -
  L3X15_RS04970 (L3X15_04970) - 1009301..1009645 (-) 345 WP_023370015.1 DUF1831 domain-containing protein -
  L3X15_RS04975 (L3X15_04975) - 1009647..1010762 (-) 1116 WP_023370017.1 cysteine desulfurase family protein -
  L3X15_RS04980 (L3X15_04980) - 1010773..1011750 (-) 978 WP_012775438.1 ribose-phosphate diphosphokinase -
  L3X15_RS04985 (L3X15_04985) - 1011895..1012461 (-) 567 WP_002935243.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25800.00 Da        Isoelectric Point: 7.9541

>NTDB_id=561236 L3X15_RS04950 WP_023370011.1 1006950..1007630(+) (radC) [Streptococcus suis strain LSM29]
MYQIEFKEEAFLPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREQSELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=561236 L3X15_RS04950 WP_023370011.1 1006950..1007630(+) (radC) [Streptococcus suis strain LSM29]
ATGTATCAAATTGAATTTAAAGAAGAGGCCTTTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGTATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCACAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAACAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(108-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

64.602

100

0.646
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482