Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV11_RS11370 Genome accession   NZ_CP073809
Coordinates   2128162..2128683 (-) Length   173 a.a.
NCBI ID   WP_149458896.1    Uniprot ID   A0A9Q9F3C3
Organism   Macrococcus equipercicus strain Epi0143-OL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2123162..2133683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV11_RS11340 (KFV11_11335) xpt 2123491..2124069 (-) 579 WP_149458890.1 xanthine phosphoribosyltransferase -
  KFV11_RS11345 (KFV11_11340) - 2124507..2125667 (+) 1161 WP_254249967.1 DUF2382 domain-containing protein -
  KFV11_RS11350 (KFV11_11345) - 2125730..2126509 (+) 780 WP_149458892.1 ZIP family metal transporter -
  KFV11_RS11355 (KFV11_11350) - 2126534..2127049 (-) 516 WP_170234550.1 YfbU family protein -
  KFV11_RS11360 (KFV11_11355) - 2127267..2127854 (+) 588 WP_254249968.1 GNAT family N-acetyltransferase -
  KFV11_RS11365 (KFV11_11360) rpsR 2127892..2128134 (-) 243 WP_149458895.1 30S ribosomal protein S18 -
  KFV11_RS11370 (KFV11_11365) ssbA 2128162..2128683 (-) 522 WP_149458896.1 single-stranded DNA-binding protein Machinery gene
  KFV11_RS11375 (KFV11_11370) rpsF 2128704..2128994 (-) 291 WP_149458897.1 30S ribosomal protein S6 -
  KFV11_RS11380 (KFV11_11375) - 2129101..2129424 (-) 324 WP_149458898.1 hypothetical protein -
  KFV11_RS11385 (KFV11_11380) ychF 2129436..2130536 (-) 1101 WP_149458899.1 redox-regulated ATPase YchF -
  KFV11_RS11390 (KFV11_11385) - 2130548..2130745 (-) 198 WP_149458900.1 DUF951 domain-containing protein -
  KFV11_RS11395 (KFV11_11390) - 2130735..2131631 (-) 897 WP_149458901.1 mechanosensitive ion channel family protein -
  KFV11_RS11400 (KFV11_11395) - 2131641..2132492 (-) 852 WP_149458902.1 ParB/RepB/Spo0J family partition protein -
  KFV11_RS11405 (KFV11_11400) - 2132485..2133243 (-) 759 WP_149458903.1 ParA family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18953.53 Da        Isoelectric Point: 4.6856

>NTDB_id=560948 KFV11_RS11370 WP_149458896.1 2128162..2128683(-) (ssbA) [Macrococcus equipercicus strain Epi0143-OL]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFSNAQGERQADFLNCVVFRKQAENVNNFLSKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKGANQNRQNNNDDYSGYDPGFGGQTQGQNYQSNNTNQNNSNQASSAPSNNPFANA
TGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=560948 KFV11_RS11370 WP_149458896.1 2128162..2128683(-) (ssbA) [Macrococcus equipercicus strain Epi0143-OL]
ATGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACAAAGGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
CACATTTACATTAGCAGTTAACCGTACATTTTCGAATGCACAGGGAGAACGCCAGGCAGATTTTCTGAACTGTGTCGTCT
TTCGCAAGCAGGCAGAGAATGTCAATAACTTCTTAAGTAAAGGCAGCTTAGCCGGTGTAGACGGCAGATTGCAATCTCGC
AGTTATGATAATCAAGAAGGCCGCAAAGTGTATGTGACTGAAGTCGTCTGCGACTCAGTGCAGTTCCTTGAACCTAAAGG
CGCTAACCAGAACCGTCAGAATAATAATGATGACTATTCTGGCTATGATCCAGGATTCGGTGGACAAACACAAGGTCAGA
ATTATCAATCCAACAACACTAATCAAAATAATTCAAATCAGGCATCATCCGCTCCATCAAACAATCCTTTTGCCAATGCA
ACAGGACCGATTGATATAAGCGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.116

100

0.601
  ssb Latilactobacillus sakei subsp. sakei 23K

50.543

100

0.538
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.364
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364