Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV10_RS11915 Genome accession   NZ_CP073808
Coordinates   2252987..2253505 (-) Length   172 a.a.
NCBI ID   WP_254253878.1    Uniprot ID   -
Organism   Macrococcoides canis strain IMD0709     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2247987..2258505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV10_RS11890 (KFV10_11870) xpt 2249183..2249767 (-) 585 WP_236366076.1 xanthine phosphoribosyltransferase -
  KFV10_RS11895 (KFV10_11875) - 2250271..2251257 (+) 987 WP_086043610.1 DUF2382 domain-containing protein -
  KFV10_RS11900 (KFV10_11880) - 2251408..2251974 (+) 567 WP_254253877.1 GNAT family N-acetyltransferase -
  KFV10_RS11905 (KFV10_11885) - 2251971..2252528 (-) 558 WP_086043612.1 YfbU family protein -
  KFV10_RS11910 (KFV10_11890) rpsR 2252712..2252954 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  KFV10_RS11915 (KFV10_11895) ssbA 2252987..2253505 (-) 519 WP_254253878.1 single-stranded DNA-binding protein Machinery gene
  KFV10_RS11920 (KFV10_11900) rpsF 2253530..2253820 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  KFV10_RS11925 (KFV10_11905) ychF 2254297..2255397 (-) 1101 WP_254253879.1 redox-regulated ATPase YchF -
  KFV10_RS11930 (KFV10_11910) - 2255416..2255604 (-) 189 WP_138072882.1 DUF951 domain-containing protein -
  KFV10_RS11935 (KFV10_11915) - 2255606..2256493 (-) 888 WP_210152326.1 mechanosensitive ion channel family protein -
  KFV10_RS11940 (KFV10_11920) - 2256494..2257357 (-) 864 WP_086043618.1 ParB/RepB/Spo0J family partition protein -
  KFV10_RS11945 (KFV10_11925) - 2257350..2258111 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19029.58 Da        Isoelectric Point: 4.7172

>NTDB_id=560918 KFV10_RS11915 WP_254253878.1 2252987..2253505(-) (ssbA) [Macrococcoides canis strain IMD0709]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTEGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=560918 KFV10_RS11915 WP_254253878.1 2252987..2253505(-) (ssbA) [Macrococcoides canis strain IMD0709]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGCTATGACCAAGGTAGTTATGGTCAGACGGAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.651
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.225

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366