Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV08_RS12185 Genome accession   NZ_CP073805
Coordinates   2330539..2331057 (-) Length   172 a.a.
NCBI ID   WP_086043613.1    Uniprot ID   A0A1W7AER1
Organism   Macrococcoides canis strain Epi3241-OR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2325539..2336057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV08_RS12155 (KFV08_12150) - 2326452..2326955 (-) 504 Protein_2370 solute carrier family 23 protein -
  KFV08_RS12160 (KFV08_12155) - 2326957..2327189 (-) 233 Protein_2371 xanthine phosphoribosyltransferase -
  KFV08_RS12165 (KFV08_12160) - 2327693..2328673 (+) 981 WP_252455587.1 DUF2382 domain-containing protein -
  KFV08_RS12170 (KFV08_12165) - 2328777..2329391 (+) 615 WP_164942950.1 GNAT family N-acetyltransferase -
  KFV08_RS12175 (KFV08_12170) - 2329388..2329945 (-) 558 WP_164942951.1 YfbU family protein -
  KFV08_RS12180 (KFV08_12175) rpsR 2330264..2330506 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  KFV08_RS12185 (KFV08_12180) ssbA 2330539..2331057 (-) 519 WP_086043613.1 single-stranded DNA-binding protein Machinery gene
  KFV08_RS12190 (KFV08_12185) rpsF 2331082..2331372 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  KFV08_RS12195 (KFV08_12190) ychF 2331849..2332949 (-) 1101 WP_252455583.1 redox-regulated ATPase YchF -
  KFV08_RS12200 (KFV08_12195) - 2332968..2333156 (-) 189 WP_138072882.1 DUF951 domain-containing protein -
  KFV08_RS12205 (KFV08_12200) - 2333158..2334045 (-) 888 WP_210152326.1 mechanosensitive ion channel family protein -
  KFV08_RS12210 (KFV08_12205) - 2334046..2334909 (-) 864 WP_086043618.1 ParB/RepB/Spo0J family partition protein -
  KFV08_RS12215 (KFV08_12210) - 2334902..2335663 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.60 Da        Isoelectric Point: 4.8835

>NTDB_id=560886 KFV08_RS12185 WP_086043613.1 2330539..2331057(-) (ssbA) [Macrococcoides canis strain Epi3241-OR]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=560886 KFV08_RS12185 WP_086043613.1 2330539..2331057(-) (ssbA) [Macrococcoides canis strain Epi3241-OR]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGTTATGACCAAGGTAGTTATGGTCAGACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AER1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366