Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV05_RS12260 Genome accession   NZ_CP073799
Coordinates   2378955..2379473 (-) Length   172 a.a.
NCBI ID   WP_086043613.1    Uniprot ID   A0A1W7AER1
Organism   Macrococcoides canis strain Epi0089     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2373955..2384473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV05_RS12230 (KFV05_12225) - 2374956..2375459 (-) 504 Protein_2378 solute carrier family 23 protein -
  KFV05_RS12235 (KFV05_12230) - 2375461..2375694 (-) 234 Protein_2379 xanthine phosphoribosyltransferase -
  KFV05_RS12240 (KFV05_12235) - 2376198..2377178 (+) 981 WP_164942949.1 DUF2382 domain-containing protein -
  KFV05_RS12245 (KFV05_12240) - 2377282..2377896 (+) 615 WP_254246329.1 GNAT family N-acetyltransferase -
  KFV05_RS12250 (KFV05_12245) - 2377893..2378450 (-) 558 WP_254246330.1 YfbU family protein -
  KFV05_RS12255 (KFV05_12250) rpsR 2378680..2378922 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  KFV05_RS12260 (KFV05_12255) ssbA 2378955..2379473 (-) 519 WP_086043613.1 single-stranded DNA-binding protein Machinery gene
  KFV05_RS12265 (KFV05_12260) rpsF 2379498..2379788 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  KFV05_RS12270 (KFV05_12265) ychF 2380265..2381365 (-) 1101 WP_164942952.1 redox-regulated ATPase YchF -
  KFV05_RS12275 (KFV05_12270) - 2381384..2381572 (-) 189 WP_138072882.1 DUF951 domain-containing protein -
  KFV05_RS12280 (KFV05_12275) - 2381574..2382461 (-) 888 WP_210152326.1 mechanosensitive ion channel family protein -
  KFV05_RS12285 (KFV05_12280) - 2382462..2383325 (-) 864 WP_086043618.1 ParB/RepB/Spo0J family partition protein -
  KFV05_RS12290 (KFV05_12285) - 2383318..2384079 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.60 Da        Isoelectric Point: 4.8835

>NTDB_id=560791 KFV05_RS12260 WP_086043613.1 2378955..2379473(-) (ssbA) [Macrococcoides canis strain Epi0089]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=560791 KFV05_RS12260 WP_086043613.1 2378955..2379473(-) (ssbA) [Macrococcoides canis strain Epi0089]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGCTATGACCAAGGTAGTTATGGTCAGACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AER1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366