Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFB96_RS14780 Genome accession   NZ_CP073760
Coordinates   3260695..3261162 (+) Length   155 a.a.
NCBI ID   WP_213457721.1    Uniprot ID   -
Organism   MAG: Thiocapsa sp. isolate M50B4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3260695..3272112 3260695..3261162 within 0


Gene organization within MGE regions


Location: 3260695..3272112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFB96_RS14780 (KFB96_14780) ssb 3260695..3261162 (+) 468 WP_213457721.1 single-stranded DNA-binding protein Machinery gene
  KFB96_RS14785 (KFB96_14785) - 3261376..3261651 (-) 276 WP_213457720.1 PBPRA1643 family SWIM/SEC-C metal-binding motif protein -
  KFB96_RS14790 (KFB96_14790) - 3261973..3262905 (+) 933 WP_213457719.1 recombinase RecT -
  KFB96_RS14795 (KFB96_14795) - 3262980..3263978 (+) 999 WP_213457718.1 lambda-exonuclease family protein -
  KFB96_RS14800 (KFB96_14800) - 3264055..3265008 (+) 954 WP_213457717.1 AAA family ATPase -
  KFB96_RS14805 (KFB96_14805) - 3265005..3265322 (+) 318 WP_213457716.1 hypothetical protein -
  KFB96_RS14810 (KFB96_14810) - 3265402..3266376 (+) 975 WP_213457715.1 DUF3150 domain-containing protein -
  KFB96_RS14815 (KFB96_14815) - 3266450..3268174 (+) 1725 WP_213465102.1 VWA domain-containing protein -
  KFB96_RS14820 (KFB96_14820) radC 3268372..3268757 (+) 386 Protein_2989 DNA repair protein RadC -
  KFB96_RS14825 (KFB96_14825) - 3268823..3269920 (+) 1098 WP_213457713.1 toprim domain-containing protein -
  KFB96_RS14835 (KFB96_14835) - 3270320..3271009 (-) 690 WP_213457712.1 ISAs1 family transposase -
  KFB96_RS26845 - 3271048..3272112 (-) 1065 WP_300970325.1 Druantia anti-phage system protein DruA -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17092.28 Da        Isoelectric Point: 6.8864

>NTDB_id=560543 KFB96_RS14780 WP_213457721.1 3260695..3261162(+) (ssb) [MAG: Thiocapsa sp. isolate M50B4]
MSNGINKAILIGNLGADPEVRTLPSGDAVANISLATSESWTDRTTGELHERTDWHRIALFGKVAEIAGEYLHKGSRVYVE
GKLRTRKWTTAEGHERYTTEVIVDARGSMQMLDGRAVQEPAPEPKPEPPKPVRKARKPKARPEPALAEGDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=560543 KFB96_RS14780 WP_213457721.1 3260695..3261162(+) (ssb) [MAG: Thiocapsa sp. isolate M50B4]
ATGTCAAACGGCATCAACAAGGCCATTTTGATCGGCAATCTGGGCGCCGATCCAGAAGTGCGCACGCTCCCCAGCGGGGA
TGCGGTCGCCAACATCAGCCTTGCGACCAGCGAAAGCTGGACCGACCGCACGACCGGCGAGCTGCACGAGCGTACCGATT
GGCACCGCATCGCGCTGTTCGGCAAGGTCGCCGAGATCGCGGGCGAGTACCTGCACAAGGGCTCGCGCGTCTACGTCGAA
GGCAAGCTGCGCACGCGCAAGTGGACGACCGCCGAAGGCCACGAGCGCTACACCACCGAGGTCATCGTCGACGCACGCGG
CTCCATGCAGATGCTCGACGGTCGCGCGGTGCAGGAGCCCGCACCGGAACCCAAGCCCGAGCCGCCAAAGCCGGTCCGTA
AGGCGCGTAAGCCGAAGGCACGGCCCGAGCCGGCGCTGGCCGAGGGCGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.574
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.548
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.49
  ssb Neisseria meningitidis MC58

42.045

100

0.477