Detailed information NTG0560420

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KEM63_RS03630
• Genome accession: NZ_CP073751
• Coordinates: 805429..806772 (-)
• Length: 447 a.a.
• NCBI ID: WP_223654841.1
• Uniprot ID: -
• Organism: Halopseudomonas nanhaiensis strain SCS 2-3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 800429..811772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEM63_RS03615 (KEM63_03595)	-	801466..802518 (+)	1053	WP_223654838.1	M48 family metallopeptidase	-
KEM63_RS03620 (KEM63_03600)	mqo	802550..804037 (-)	1488	WP_228744799.1	malate dehydrogenase (quinone)	-
KEM63_RS03625 (KEM63_03605)	thiO	804243..805343 (+)	1101	WP_223654840.1	glycine oxidase ThiO	-
KEM63_RS03630 (KEM63_03610)	pilR	805429..806772 (-)	1344	WP_223654841.1	sigma-54 dependent transcriptional regulator	Regulator
KEM63_RS03635 (KEM63_03615)	pilS	806815..808404 (-)	1590	WP_223654842.1	ATP-binding protein	Regulator
KEM63_RS03640 (KEM63_03620)	-	808397..808633 (-)	237	WP_223654843.1	PP0621 family protein	-
KEM63_RS03645 (KEM63_03625)	-	808906..809901 (-)	996	WP_223654844.1	outer membrane protein assembly factor BamD	-
KEM63_RS03650 (KEM63_03630)	rluD	810097..811056 (+)	960	WP_223654845.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49562.09 Da
• Isoelectric Point: 5.4084

>NTDB_id=560420 KEM63_RS03630 WP_223654841.1 805429..806772(-) (pilR) [Halopseudomonas nanhaiensis strain SCS 2-3]
MTSPLVLIIDDEPDILELLDMTLRRMNLRTRSATTLAAALDMLREERFDLCLTDMRLPDGDGMAVVRHIQQNCPSLPVAM
ITAYGSLDTAITALKAGAFDFLTKPVDLQRLRELVNSALRLSQKAEAEPETAVDDPILGMSPPIQQLRGQIAKLARSQAP
LYISGESGSGKELVARRIHALGPRASHPFVPVNCGAIPSELMESEFFGHRKGSFTGAVSDKPGLFQAAKGGTLFLDEVAD
LPMAMQVKLLRAIQEKAVRPVGTQQEETVDVRLLCATHKDLAAEVAAGRFRQDLFYRINVIELSVPPLRKRREDIPLLAR
HILTQLAVRNDLPLPRLTSACLEQLCNYRFPGNVRELENTLERAFTLCEGNVIDAEDILLSGAAQTSEENVSLGDIDSLE
DYLDDIERRAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGMED

Nucleotide

• Length: 1344 bp

>NTDB_id=560420 KEM63_RS03630 WP_223654841.1 805429..806772(-) (pilR) [Halopseudomonas nanhaiensis strain SCS 2-3]
ATGACTAGCCCGCTGGTTCTGATCATCGACGACGAGCCGGACATCCTCGAACTGCTCGACATGACGCTTCGCCGCATGAA
CCTGCGCACGCGCAGTGCCACCACACTGGCCGCGGCGCTCGACATGCTGCGCGAAGAGCGCTTCGACCTGTGTCTGACCG
ATATGCGCCTACCCGACGGTGACGGAATGGCTGTGGTCAGACATATTCAGCAGAACTGCCCTTCCCTGCCGGTGGCCATG
ATCACCGCTTATGGCAGCCTGGACACCGCCATCACGGCGCTCAAGGCCGGCGCTTTCGATTTTCTGACCAAGCCGGTGGA
TCTGCAGCGCCTGCGCGAGCTGGTCAACAGCGCGCTCCGCCTGAGCCAGAAGGCAGAAGCAGAGCCGGAGACGGCGGTCG
ATGACCCGATCCTGGGCATGTCACCGCCGATTCAACAGCTGCGCGGACAGATCGCCAAGCTCGCCCGCAGCCAGGCGCCA
CTGTACATAAGCGGTGAGTCCGGCAGCGGCAAGGAGCTGGTCGCCCGGCGGATTCATGCACTTGGGCCACGCGCGAGCCA
CCCGTTCGTACCGGTGAACTGCGGCGCCATTCCGTCCGAGCTGATGGAAAGTGAATTCTTCGGGCACCGCAAGGGCAGTT
TCACCGGCGCCGTGTCCGACAAGCCCGGCCTGTTCCAGGCGGCCAAAGGCGGAACGCTGTTTCTGGACGAGGTGGCCGAC
CTGCCGATGGCCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCGTTCGCCCGGTGGGCACCCAGCAGGAAGA
AACGGTCGATGTGCGCCTGTTGTGCGCGACGCACAAGGATCTGGCCGCAGAAGTCGCTGCCGGGCGTTTTCGTCAGGATC
TGTTCTACCGCATCAATGTGATCGAGCTGAGCGTGCCGCCGCTGCGCAAGCGACGCGAGGACATCCCGTTGCTGGCCCGG
CACATCCTCACCCAGCTGGCGGTCCGCAACGATCTGCCGTTACCCAGACTGACCAGCGCATGCCTCGAACAACTGTGCAA
TTACCGTTTTCCGGGCAATGTTCGCGAGCTGGAAAATACGCTCGAGCGGGCGTTCACCCTCTGCGAGGGCAACGTAATCG
ATGCCGAGGATATTCTCCTCTCGGGCGCGGCGCAGACCAGCGAGGAGAACGTATCGCTCGGCGACATCGATTCGCTGGAG
GATTACCTCGATGACATAGAGCGCCGGGCGATCACCCAGGCGCTGGAAGAGACCCGCTGGAACAAGACTGCAGCGGCCAA
GCGACTGGGTCTCACCTTCCGCTCCCTGCGCTATCGGCTCAAGAAGCTCGGAATGGAAGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	72.707	100	0.727
pilR	Acinetobacter baumannii strain A118	49.675	100	0.512
luxO	Vibrio cholerae strain A1552	37.136	100	0.371