Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KEM63_RS03635 Genome accession   NZ_CP073751
Coordinates   806815..808404 (-) Length   529 a.a.
NCBI ID   WP_223654842.1    Uniprot ID   -
Organism   Halopseudomonas nanhaiensis strain SCS 2-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 801815..813404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM63_RS03620 (KEM63_03600) mqo 802550..804037 (-) 1488 WP_228744799.1 malate dehydrogenase (quinone) -
  KEM63_RS03625 (KEM63_03605) thiO 804243..805343 (+) 1101 WP_223654840.1 glycine oxidase ThiO -
  KEM63_RS03630 (KEM63_03610) pilR 805429..806772 (-) 1344 WP_223654841.1 sigma-54 dependent transcriptional regulator Regulator
  KEM63_RS03635 (KEM63_03615) pilS 806815..808404 (-) 1590 WP_223654842.1 ATP-binding protein Regulator
  KEM63_RS03640 (KEM63_03620) - 808397..808633 (-) 237 WP_223654843.1 PP0621 family protein -
  KEM63_RS03645 (KEM63_03625) - 808906..809901 (-) 996 WP_223654844.1 outer membrane protein assembly factor BamD -
  KEM63_RS03650 (KEM63_03630) rluD 810097..811056 (+) 960 WP_223654845.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KEM63_RS03655 (KEM63_03635) pgeF 811053..811784 (+) 732 WP_223654846.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 59162.57 Da        Isoelectric Point: 6.3204

>NTDB_id=560421 KEM63_RS03635 WP_223654842.1 806815..808404(-) (pilS) [Halopseudomonas nanhaiensis strain SCS 2-3]
MARQEDSQRARIVRIYNLYRVVLAFLLALLSTSLRDGLLDLANPELYEAASWIYLLVNVAIALMLHQGRRDLHLFVTAVL
DIFLLSLLFYAAGGAGSGFGNLLLIPVATGNILLHGRIGLLLAALASLALMYLTFFLSLSMPALPQNYLQVGVLGCIFFA
VALFVQRLSRKVQQSETLAQQQAVSLASLEKLNKLIIQRMRTGIVVVNKRHQVLLANEASAQMLGKPIMREMELEGLSSA
LAQRLQQWQQYPSIRALPFQNHSGGAELMANFKPLTQAGDETVLIFLDDNAQVAQQAQQLKLASLGRLTASIAHEIRNPL
GAISHAAQLLSESAQLTEQDLRLSEIIQQHSKRMNRVIETVLELSRRRPSEPQLVDLGLWMEQFLQDFEPSKLASDMIEF
ECETQPDGEPIMTRMDPNQLSQVLGNLCQNALRYSGREGEPRTIWIRLYINHETDLPVLEVIDHGPGIDADHVPHIFEPF
YTTEASGTGLGLYISRELCESNQARLEYEPLEPRGCCMRITFAHPKRLV

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=560421 KEM63_RS03635 WP_223654842.1 806815..808404(-) (pilS) [Halopseudomonas nanhaiensis strain SCS 2-3]
ATGGCTAGGCAGGAAGACTCCCAGCGAGCGCGGATCGTCAGGATCTACAACCTTTACCGGGTAGTCCTGGCCTTCCTCCT
CGCGCTGTTGAGCACCTCGCTGCGCGATGGTCTGCTCGATCTGGCCAACCCCGAACTGTACGAGGCGGCCAGCTGGATCT
ACCTGCTGGTCAACGTCGCCATCGCCCTGATGCTGCATCAGGGGCGCCGTGATCTTCATCTGTTCGTCACGGCGGTTCTG
GACATCTTCCTGCTCAGCCTGCTGTTCTATGCAGCCGGTGGTGCCGGCAGCGGCTTCGGCAACCTGCTGCTGATTCCGGT
CGCCACAGGCAATATCCTGCTGCACGGCCGTATCGGCCTGCTGCTAGCCGCGCTGGCCAGCCTGGCGCTGATGTATCTGA
CCTTCTTCCTCAGCCTGTCGATGCCGGCGTTACCGCAGAATTATCTGCAGGTGGGCGTGCTCGGCTGCATCTTCTTTGCC
GTCGCGCTCTTTGTGCAGCGGCTCAGTCGCAAGGTGCAGCAATCGGAGACGCTTGCCCAGCAGCAGGCGGTGAGTCTGGC
CTCGCTGGAGAAGCTCAACAAACTGATCATCCAGCGCATGCGCACCGGCATCGTGGTGGTGAACAAGCGGCACCAGGTGC
TGCTGGCCAACGAAGCGTCTGCGCAGATGCTTGGCAAGCCGATCATGCGCGAGATGGAGCTGGAAGGTCTCTCCTCTGCG
TTGGCCCAGCGACTGCAGCAGTGGCAGCAGTACCCCTCGATCCGCGCACTGCCGTTCCAGAACCACAGCGGCGGCGCAGA
GCTGATGGCCAACTTCAAACCGTTGACCCAGGCTGGTGACGAGACGGTGTTGATCTTCCTCGATGACAACGCCCAGGTCG
CTCAGCAGGCGCAGCAACTCAAGCTTGCGTCGCTAGGGCGACTTACCGCCAGCATCGCCCACGAGATTCGCAATCCGCTT
GGCGCGATCAGCCATGCCGCGCAACTGCTCAGCGAATCGGCTCAGCTGACCGAGCAGGACCTGCGCCTGAGCGAAATCAT
CCAGCAGCATTCCAAGCGCATGAACAGGGTCATCGAGACGGTACTCGAGTTGTCGCGTCGACGTCCGAGTGAACCGCAAC
TGGTGGATCTCGGGCTCTGGATGGAGCAGTTTCTGCAGGATTTCGAGCCGTCGAAGCTGGCCTCGGACATGATCGAGTTC
GAATGCGAGACTCAGCCCGACGGGGAACCCATCATGACGCGCATGGACCCCAATCAGCTCAGCCAGGTGCTCGGCAATCT
CTGCCAGAACGCTCTGCGCTACAGCGGCCGCGAAGGCGAACCGCGAACGATCTGGATTCGGTTGTACATCAATCATGAGA
CCGATCTACCCGTGCTGGAAGTGATCGATCACGGGCCGGGAATCGATGCCGACCACGTGCCGCACATCTTCGAACCGTTC
TACACGACCGAAGCCTCCGGCACCGGCCTGGGTCTGTATATTTCCCGCGAACTGTGCGAAAGCAACCAGGCGAGGCTCGA
GTACGAACCCCTGGAACCTCGCGGGTGTTGCATGCGCATCACATTCGCGCACCCCAAACGCTTGGTATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

51.992

99.622

0.518