Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFE96_RS10480 Genome accession   NZ_CP073748
Coordinates   2272813..2273349 (+) Length   178 a.a.
NCBI ID   WP_255832552.1    Uniprot ID   -
Organism   Kordiimonas sp. SCSIO 12603     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2267813..2278349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFE96_RS10460 (KFE96_10500) - 2269672..2270097 (+) 426 WP_255832548.1 GFA family protein -
  KFE96_RS10465 (KFE96_10505) - 2270109..2270798 (-) 690 WP_255832549.1 hypothetical protein -
  KFE96_RS10470 (KFE96_10510) - 2270860..2272020 (-) 1161 WP_255832550.1 DUF1624 domain-containing protein -
  KFE96_RS10475 (KFE96_10515) - 2272026..2272553 (-) 528 WP_255832551.1 hypothetical protein -
  KFE96_RS10480 (KFE96_10520) ssb 2272813..2273349 (+) 537 WP_255832552.1 single-stranded DNA-binding protein Machinery gene
  KFE96_RS10485 (KFE96_10525) - 2273478..2274407 (+) 930 WP_255832553.1 DUF2608 domain-containing protein -
  KFE96_RS10490 (KFE96_10530) - 2274441..2276633 (-) 2193 WP_255832554.1 FdhF/YdeP family oxidoreductase -
  KFE96_RS10495 (KFE96_10535) - 2276666..2277259 (+) 594 WP_255832555.1 molybdenum cofactor guanylyltransferase -
  KFE96_RS10500 (KFE96_10540) - 2277311..2278114 (+) 804 WP_255832556.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18612.47 Da        Isoelectric Point: 4.7884

>NTDB_id=560408 KFE96_RS10480 WP_255832552.1 2272813..2273349(+) (ssb) [Kordiimonas sp. SCSIO 12603]
MAGSVNKVILVGNLGRDPEVRTMGNGSPVVNLSVATTESWKDRQTGERRDRTEWHRVVIFNENLAKVAQNYLRKGSSVYL
EGQLQTRKWTDQSGVEKYTTEIVLQQYRGELTMLGGRGDAGGMGMGAGGAAGGFGDSQDSYGDSFGGGAPAQGGGFGGGQ
SQGGGMGGAADLDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=560408 KFE96_RS10480 WP_255832552.1 2272813..2273349(+) (ssb) [Kordiimonas sp. SCSIO 12603]
GTGGCCGGTAGCGTTAACAAAGTAATTTTGGTAGGTAACCTCGGACGTGATCCAGAAGTGCGTACAATGGGTAATGGTTC
ACCAGTTGTGAACCTTTCTGTTGCAACGACTGAAAGCTGGAAAGACCGTCAAACAGGTGAACGCCGTGACCGTACAGAAT
GGCACCGTGTGGTTATCTTCAACGAAAACCTCGCGAAAGTGGCTCAAAACTACCTTCGTAAGGGATCTTCTGTGTATCTA
GAAGGCCAGCTTCAAACACGTAAGTGGACAGACCAGTCTGGTGTAGAGAAATATACAACAGAAATCGTGCTTCAACAGTA
TCGTGGTGAGCTTACAATGCTTGGTGGCCGTGGTGATGCAGGTGGCATGGGTATGGGTGCTGGTGGAGCAGCCGGCGGCT
TTGGTGATAGCCAGGACAGTTACGGCGATAGCTTCGGTGGCGGCGCACCTGCACAGGGTGGCGGTTTTGGCGGTGGTCAA
TCACAAGGTGGCGGCATGGGTGGTGCAGCTGATCTTGATGATGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.485

100

0.539
  ssb Vibrio cholerae strain A1552

49.444

100

0.5
  ssb Neisseria meningitidis MC58

41.622

100

0.433
  ssb Neisseria gonorrhoeae MS11

41.622

100

0.433