Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KEC58_RS00990 Genome accession   NZ_CP073684
Coordinates   203766..205394 (+) Length   542 a.a.
NCBI ID   WP_162598082.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1605     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198766..210394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC58_RS00970 (KEC58_00970) pilM 200896..201894 (+) 999 WP_005302654.1 type IV pilus assembly protein PilM -
  KEC58_RS00975 (KEC58_00975) - 201891..202532 (+) 642 WP_068945318.1 PilN domain-containing protein -
  KEC58_RS00980 (KEC58_00980) - 202529..203119 (+) 591 WP_284632294.1 type 4a pilus biogenesis protein PilO -
  KEC58_RS00985 (KEC58_00985) - 203128..203643 (+) 516 WP_036764704.1 pilus assembly protein PilP -
  KEC58_RS00990 (KEC58_00990) pilQ 203766..205394 (+) 1629 WP_162598082.1 type IV pilus secretin PilQ family protein Machinery gene
  KEC58_RS00995 (KEC58_00995) aroK 205724..206242 (+) 519 WP_036765246.1 shikimate kinase AroK -
  KEC58_RS01000 (KEC58_01000) aroB 206272..207351 (+) 1080 WP_005302661.1 3-dehydroquinate synthase -
  KEC58_RS01005 (KEC58_01005) - 207366..208874 (+) 1509 WP_284632295.1 AAA family ATPase -
  KEC58_RS01010 (KEC58_01010) dam 208982..209824 (+) 843 WP_065172417.1 adenine-specific DNA-methyltransferase -
  KEC58_RS01015 (KEC58_01015) - 209808..210005 (-) 198 WP_036764707.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 59058.68 Da        Isoelectric Point: 4.7439

>NTDB_id=559943 KEC58_RS00990 WP_162598082.1 203766..205394(+) (pilQ) [Photobacterium damselae strain Pdd1605]
MNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDIFDTAIKDDMLYVLDVVDFATVVRSIETFRTEKG
SKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYKGKPISINFQDVPVRNVLQLVAEYNDFNLVVSDT
VQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIA
DLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEDIITALDIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQ
NGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQVAKLGDILLDLELSALQAESKAEIISSPRLVTT
NKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQ
VLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKIITQ

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=559943 KEC58_RS00990 WP_162598082.1 203766..205394(+) (pilQ) [Photobacterium damselae strain Pdd1605]
ATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGAGGACGAGGCGTGCTCACCGTTCAGTT
AGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGAAAGCAATTACACATCGATATCTTTGATACCGCGATTAAAG
ATGACATGTTGTATGTACTCGATGTGGTCGACTTTGCAACTGTTGTTCGTTCGATTGAAACATTTCGCACCGAGAAAGGC
AGCAAACTTATTCTCAATATGGCTGGCGTGTTTGATTATGATTACCAATTAAAAGGCTCTCGTCTTGAAGTTGTTTTGAA
CGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAAGGTAAGCCCATCTCCATTA
ACTTCCAAGATGTTCCTGTGCGTAACGTGTTGCAGTTGGTTGCCGAATATAATGATTTTAATCTCGTGGTTTCCGATACT
GTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTATTTTGCAATCAAAAGGGTT
GGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAATGAGCGTCAAGAGATGGAAG
CCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGCTAAAGCAGGAGATATCGCA
GACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGATCTTTGCATGTTGATGAGCGTACTAATGC
CATTATCATCAAAGATATTCCTGAGAGTATTGATAGCATTGAAGATATTATCACAGCATTAGATATTCCCGTTAAACAGG
TTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACGTTGGGGTGTCGTTAATCAA
AACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGGGTGATGACGCGACTGTTGA
TGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAGGTGGCAAAACTGGGCGATA
TTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCGAAAGCAGAGATTATTTCTAGTCCTCGATTAGTAACCACC
AATAAAAAAGCGGCTTACATCGAACAAGGTACAGAGATCCCTTATTTAGAAGCGGCATCTAGTGGTGCGGTATCGGTAGA
CTTTAAAAAGGCCGTATTGAGCTTGATGGTCACACCACAAATTACCCCTGATGATAAATTGGTGCTCGATCTGCTGGTAA
CGCAAGATAAAGTAGGGGAAACAGTTGTTACCGGAACCGGAGAAGCGGTCGCTATCGATACTCAACGAATTGGCACGCAA
GTTCTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATAATTCTGTCCGTAAAGTCCC
TTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGCAAGCGTGAACTGTTGATTT
TCGTCACACCCAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(153-201)

Bacterial type II/III secretion system short domain (Secretin_N)

(227-293)

Bacterial type II and III secretion system protein (Secretin)

(382-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

63.822

99.446

0.635
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

63.822

99.446

0.635
  pilQ Vibrio campbellii strain DS40M4

61.679

100

0.624
  pilQ Legionella pneumophila strain Lp02

42.647

100

0.428
  pilQ Legionella pneumophila strain ERS1305867

42.647

100

0.428
  pilQ Pseudomonas aeruginosa PAK

41.103

100

0.426
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.419
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.419
  comQ Acinetobacter baylyi ADP1

40.248

100

0.419