Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KB879_RS02375 Genome accession   NZ_CP073677
Coordinates   460683..461231 (+) Length   182 a.a.
NCBI ID   WP_013955485.1    Uniprot ID   G0EUS1
Organism   Cupriavidus sp. KK10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 455683..466231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB879_RS02365 (KB879_02365) uvrA 456018..458882 (-) 2865 WP_153953207.1 excinuclease ABC subunit UvrA -
  KB879_RS02370 (KB879_02370) - 459249..460499 (+) 1251 WP_013955484.1 MFS transporter -
  KB879_RS02375 (KB879_02375) ssb 460683..461231 (+) 549 WP_013955485.1 single-stranded DNA-binding protein Machinery gene
  KB879_RS02380 (KB879_02380) - 461433..462476 (+) 1044 WP_228772307.1 porin -
  KB879_RS02385 (KB879_02385) - 462492..463478 (+) 987 WP_013955491.1 tripartite tricarboxylate transporter substrate binding protein -
  KB879_RS02390 (KB879_02390) - 463475..464410 (+) 936 WP_211980677.1 BMP family ABC transporter substrate-binding protein -
  KB879_RS02395 (KB879_02395) - 464418..465590 (-) 1173 WP_211980678.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18936.63 Da        Isoelectric Point: 5.9517

>NTDB_id=559864 KB879_RS02375 WP_013955485.1 460683..461231(+) (ssb) [Cupriavidus sp. KK10]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRVSFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGDEGGYGGGAGGGGYSREASGGGYGGGARGGQGGAQGGGQSGG
AARRPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=559864 KB879_RS02375 WP_013955485.1 460683..461231(+) (ssb) [Cupriavidus sp. KK10]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACGGAATGGC
ACCGCGTCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCGCGCCAGGGCGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGCGCAGGCGGCGGTGGCTACAGCC
GCGAAGCGTCGGGCGGCGGCTACGGCGGTGGCGCCCGCGGCGGCCAGGGCGGTGCCCAGGGTGGCGGCCAGAGCGGTGGC
GCGGCACGCCGTCCGCAGCAGCCGGCCTCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0EUS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.852

100

0.538
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.511
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.456
  ssb Neisseria meningitidis MC58

45.604

100

0.456