Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSYCIT7_RS22160 Genome accession   NZ_CP073636
Coordinates   5134294..5134857 (-) Length   187 a.a.
NCBI ID   WP_002555458.1    Uniprot ID   -
Organism   Pseudomonas syringae Cit 7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5129294..5139857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS22135 (PSYCIT7_022135) - 5129548..5130441 (+) 894 WP_044310365.1 ABC transporter permease subunit -
  PSYCIT7_RS22140 (PSYCIT7_022140) ugpC 5130438..5131544 (+) 1107 WP_080479902.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  PSYCIT7_RS22145 (PSYCIT7_022145) - 5131551..5132312 (+) 762 WP_003368990.1 glycerophosphoryl diester phosphodiesterase -
  PSYCIT7_RS22150 (PSYCIT7_022150) - 5132309..5133052 (+) 744 WP_003317091.1 inositol monophosphatase family protein -
  PSYCIT7_RS22155 (PSYCIT7_022155) - 5133052..5134164 (+) 1113 WP_080479903.1 endo-1,4-beta-xylanase -
  PSYCIT7_RS22160 (PSYCIT7_022160) ssb 5134294..5134857 (-) 564 WP_002555458.1 single-stranded DNA-binding protein Machinery gene
  PSYCIT7_RS22165 (PSYCIT7_022165) - 5134867..5136261 (-) 1395 WP_074805340.1 MFS transporter -
  PSYCIT7_RS22170 (PSYCIT7_022170) uvrA 5136391..5139225 (+) 2835 WP_003431812.1 excinuclease ABC subunit UvrA -
  PSYCIT7_RS22175 (PSYCIT7_022175) bfr 5139321..5139785 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20804.92 Da        Isoelectric Point: 5.9404

>NTDB_id=559655 PSYCIT7_RS22160 WP_002555458.1 5134294..5134857(-) (ssb) [Pseudomonas syringae Cit 7]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDSQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
RDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=559655 PSYCIT7_RS22160 WP_002555458.1 5134294..5134857(-) (ssb) [Pseudomonas syringae Cit 7]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTCGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
TATGCAACTGCTGGGCGGCCGTCCTCAGGGCGACTCCCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCTGCACCTC
GTCCACAGCAGTCGCGCCCACAACAATCGGCGCCGCAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTCGACAGCTTCGATGATGATATTCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.974

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.476
  ssb Neisseria meningitidis MC58

45.161

99.465

0.449
  ssb Neisseria gonorrhoeae MS11

45.161

99.465

0.449