Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSYCIT7_RS03275 Genome accession   NZ_CP073636
Coordinates   752999..754336 (-) Length   445 a.a.
NCBI ID   WP_003371131.1    Uniprot ID   A0A6B2AV07
Organism   Pseudomonas syringae Cit 7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 747999..759336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS03260 (PSYCIT7_003260) - 748133..751330 (+) 3198 WP_080480028.1 PilC/PilY family type IV pilus protein -
  PSYCIT7_RS03265 (PSYCIT7_003265) - 751342..751740 (+) 399 WP_003371127.1 type IV pilin protein -
  PSYCIT7_RS03270 (PSYCIT7_003270) thiO 751766..752869 (+) 1104 WP_003371129.1 glycine oxidase ThiO -
  PSYCIT7_RS03275 (PSYCIT7_003275) pilR 752999..754336 (-) 1338 WP_003371131.1 sigma-54 dependent transcriptional regulator Regulator
  PSYCIT7_RS03280 (PSYCIT7_003280) pilS 754339..755931 (-) 1593 WP_003371134.1 ATP-binding protein Regulator
  PSYCIT7_RS03285 (PSYCIT7_003285) - 755921..756160 (-) 240 WP_032609810.1 PP0621 family protein -
  PSYCIT7_RS03290 (PSYCIT7_003290) - 756280..757302 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  PSYCIT7_RS03295 (PSYCIT7_003295) rluD 757452..758414 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYCIT7_RS03300 (PSYCIT7_003300) pgeF 758411..759139 (+) 729 WP_080480029.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49707.69 Da        Isoelectric Point: 6.2986

>NTDB_id=559637 PSYCIT7_RS03275 WP_003371131.1 752999..754336(-) (pilR) [Pseudomonas syringae Cit 7]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=559637 PSYCIT7_RS03275 WP_003371131.1 752999..754336(-) (pilR) [Pseudomonas syringae Cit 7]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTTTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATCTGGACACGGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAACTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATTGT
CGACGTACGTATTCTGTGTGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTTTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCCCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCACGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACACGCTGGAATCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B2AV07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.878

99.551

0.775
  pilR Acinetobacter baumannii strain A118

49.036

100

0.515
  luxO Vibrio cholerae strain A1552

37.838

99.775

0.378