Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSYCIT7_RS03280 Genome accession   NZ_CP073636
Coordinates   754339..755931 (-) Length   530 a.a.
NCBI ID   WP_003371134.1    Uniprot ID   A0A8T8LZ73
Organism   Pseudomonas syringae Cit 7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 749339..760931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS03265 (PSYCIT7_003265) - 751342..751740 (+) 399 WP_003371127.1 type IV pilin protein -
  PSYCIT7_RS03270 (PSYCIT7_003270) thiO 751766..752869 (+) 1104 WP_003371129.1 glycine oxidase ThiO -
  PSYCIT7_RS03275 (PSYCIT7_003275) pilR 752999..754336 (-) 1338 WP_003371131.1 sigma-54 dependent transcriptional regulator Regulator
  PSYCIT7_RS03280 (PSYCIT7_003280) pilS 754339..755931 (-) 1593 WP_003371134.1 ATP-binding protein Regulator
  PSYCIT7_RS03285 (PSYCIT7_003285) - 755921..756160 (-) 240 WP_032609810.1 PP0621 family protein -
  PSYCIT7_RS03290 (PSYCIT7_003290) - 756280..757302 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  PSYCIT7_RS03295 (PSYCIT7_003295) rluD 757452..758414 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSYCIT7_RS03300 (PSYCIT7_003300) pgeF 758411..759139 (+) 729 WP_080480029.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58051.98 Da        Isoelectric Point: 7.0012

>NTDB_id=559638 PSYCIT7_RS03280 WP_003371134.1 754339..755931(-) (pilS) [Pseudomonas syringae Cit 7]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQRALHLLGQEQLVGQLID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDPRSELPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=559638 PSYCIT7_RS03280 WP_003371134.1 754339..755931(-) (pilS) [Pseudomonas syringae Cit 7]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCGCAGCGGATTCTGCGGCTGTACCACCTCTATCGACTGACCAT
CGGCGTCGTACTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCGCTGTTCTACGCCGCCGGCGGGCCCTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTAGCGATCAGCAATGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCCTGTGCTTCGCCGCCGCCCTACTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAGCAGCG
TGCGGCGGATGTCGACAGCCTGGAGGCACTCAACGCACTCATTCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGAGGGCCTTGCACCTGCTGGGCCAGGAACAACTGGTCGGCCAGCTCATCGAC
ACCTGCTCGCCACAACTGGTCGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTGGGGCTGGTACTGCAACCGAGCTTCGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCACGAA
ATACGCAACCCGCTGGGTGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATCGGGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGACCTGAAAACCTGGCTGGAACACTTTGTTGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAACTGACGCAAATCATGACCAA
CCTGTTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCATCAGCACAGGTCTGGCTGAAACTGCACAATGACCCCA
GAAGCGAGCTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAGAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACAGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.829

100

0.609