Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KEF49_RS16975 Genome accession   NZ_CP073635
Coordinates   3344389..3345078 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3339389..3350078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS16940 (KEF49_16940) - 3339588..3340070 (-) 483 WP_013353780.1 flagellar protein FlgN -
  KEF49_RS16945 (KEF49_16945) flgM 3340085..3340351 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  KEF49_RS16950 (KEF49_16950) - 3340421..3340840 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  KEF49_RS16955 (KEF49_16955) comFC 3340914..3341609 (-) 696 WP_231131128.1 double zinc ribbon domain-containing protein Machinery gene
  KEF49_RS16960 (KEF49_16960) - 3341609..3341893 (-) 285 WP_013353784.1 competence protein ComFB -
  KEF49_RS16965 (KEF49_16965) comFA 3341952..3343337 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  KEF49_RS16970 (KEF49_16970) - 3343444..3344292 (-) 849 WP_212099493.1 DegV family protein -
  KEF49_RS16975 (KEF49_16975) degU 3344389..3345078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KEF49_RS16980 (KEF49_16980) degS 3345155..3346318 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator
  KEF49_RS16985 (KEF49_16985) - 3346541..3347188 (+) 648 WP_212099496.1 YigZ family protein -
  KEF49_RS16990 (KEF49_16990) - 3347193..3348374 (+) 1182 WP_065982456.1 LCP family protein -
  KEF49_RS16995 (KEF49_16995) - 3348475..3349551 (-) 1077 WP_060964142.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=559619 KEF49_RS16975 WP_003219701.1 3344389..3345078(-) (degU) [Bacillus amyloliquefaciens strain Ba13]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=559619 KEF49_RS16975 WP_003219701.1 3344389..3345078(-) (degU) [Bacillus amyloliquefaciens strain Ba13]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGTGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGATGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1