Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KEF49_RS16955 Genome accession   NZ_CP073635
Coordinates   3340914..3341609 (-) Length   231 a.a.
NCBI ID   WP_231131128.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3335914..3346609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS16920 (KEF49_16920) fliW 3336005..3336436 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KEF49_RS16925 (KEF49_16925) - 3336466..3337035 (-) 570 WP_115996791.1 DUF6470 family protein -
  KEF49_RS16930 (KEF49_16930) flgL 3337126..3338043 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  KEF49_RS16935 (KEF49_16935) flgK 3338055..3339572 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  KEF49_RS16940 (KEF49_16940) - 3339588..3340070 (-) 483 WP_013353780.1 flagellar protein FlgN -
  KEF49_RS16945 (KEF49_16945) flgM 3340085..3340351 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  KEF49_RS16950 (KEF49_16950) - 3340421..3340840 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  KEF49_RS16955 (KEF49_16955) comFC 3340914..3341609 (-) 696 WP_231131128.1 double zinc ribbon domain-containing protein Machinery gene
  KEF49_RS16960 (KEF49_16960) - 3341609..3341893 (-) 285 WP_013353784.1 competence protein ComFB -
  KEF49_RS16965 (KEF49_16965) comFA 3341952..3343337 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  KEF49_RS16970 (KEF49_16970) - 3343444..3344292 (-) 849 WP_212099493.1 DegV family protein -
  KEF49_RS16975 (KEF49_16975) degU 3344389..3345078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KEF49_RS16980 (KEF49_16980) degS 3345155..3346318 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25565.30 Da        Isoelectric Point: 8.2933

>NTDB_id=559617 KEF49_RS16955 WP_231131128.1 3340914..3341609(-) (comFC) [Bacillus amyloliquefaciens strain Ba13]
MSLNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRS
VYLYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLADRGFNQSELLASLLGMPVISPLI
RLNNEKQSKKSKTERLSGEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 696 bp        

>NTDB_id=559617 KEF49_RS16955 WP_231131128.1 3340914..3341609(-) (comFC) [Bacillus amyloliquefaciens strain Ba13]
ATTTCTCTGAATTGTTTATTGTGTGACTCCCCAATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGA
GCAAGAGGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGCCCCGTATGCAGTTTATGCGGAAGGCCTCAGC
AGTCAAACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCG
GTTTATTTGTATAATGATGCAATGAAGGATTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATT
TGAACGTGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCG
AACGGCTGGCGGACCGCGGATTCAATCAATCCGAGCTGCTGGCCTCCCTGCTCGGAATGCCCGTCATTTCCCCCCTCATC
AGACTGAACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGGAGAAAAAAAGTTTTCAGCTGCCGAAAA
CTCCGCAGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCATCAAGCTGCCGAAGCTC
TGCTGACTGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(168-229)

Double zinc ribbon domain (DZR_2)

(4-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.699

99.134

0.602