Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KEF49_RS06925 Genome accession   NZ_CP073635
Coordinates   1377294..1377578 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372294..1382578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS06905 (KEF49_06905) - 1373541..1374449 (+) 909 WP_212101219.1 ketopantoate reductase family protein -
  KEF49_RS06910 (KEF49_06910) - 1374480..1375712 (-) 1233 WP_212101222.1 aminopeptidase -
  KEF49_RS06915 (KEF49_06915) - 1375813..1375947 (-) 135 WP_016936273.1 protein YkpC -
  KEF49_RS06920 (KEF49_06920) mreBH 1376018..1377025 (-) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  KEF49_RS06925 (KEF49_06925) abrB 1377294..1377578 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KEF49_RS06930 (KEF49_06930) - 1377751..1379055 (+) 1305 WP_212101225.1 ATP-binding protein -
  KEF49_RS06935 (KEF49_06935) - 1379057..1379884 (+) 828 WP_115997196.1 gamma-glutamylcyclotransferase -
  KEF49_RS06940 (KEF49_06940) ktrC 1379925..1380590 (+) 666 WP_065981365.1 Ktr system potassium transporter KtrC -
  KEF49_RS06945 (KEF49_06945) ade 1380739..1382472 (+) 1734 WP_212101228.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=559583 KEF49_RS06925 WP_013352109.1 1377294..1377578(+) (abrB) [Bacillus amyloliquefaciens strain Ba13]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=559583 KEF49_RS06925 WP_013352109.1 1377294..1377578(+) (abrB) [Bacillus amyloliquefaciens strain Ba13]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAGCTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATAGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GTTTAATGACCGGAGAAATTACTCCCGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553