Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KEF49_RS01780 Genome accession   NZ_CP073635
Coordinates   363087..363524 (-) Length   145 a.a.
NCBI ID   WP_212100261.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 358087..368524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS01755 (KEF49_01755) - 359105..360241 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  KEF49_RS01760 (KEF49_01760) - 360256..360690 (+) 435 WP_013350964.1 RDD family protein -
  KEF49_RS01765 (KEF49_01765) - 360763..361086 (+) 324 WP_212100253.1 YckD family protein -
  KEF49_RS01770 (KEF49_01770) - 361191..362627 (+) 1437 WP_212100256.1 family 1 glycosylhydrolase -
  KEF49_RS01775 (KEF49_01775) nin/comJ 362668..363066 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  KEF49_RS01780 (KEF49_01780) nucA/comI 363087..363524 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KEF49_RS01785 (KEF49_01785) hxlB 363874..364431 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  KEF49_RS01790 (KEF49_01790) hxlA 364428..365063 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  KEF49_RS01795 (KEF49_01795) - 365295..365657 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=559560 KEF49_RS01780 WP_212100261.1 363087..363524(-) (nucA/comI) [Bacillus amyloliquefaciens strain Ba13]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKLILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=559560 KEF49_RS01780 WP_212100261.1 363087..363524(-) (nucA/comI) [Bacillus amyloliquefaciens strain Ba13]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGTTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641