Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   KEF49_RS01775 Genome accession   NZ_CP073635
Coordinates   362668..363066 (-) Length   132 a.a.
NCBI ID   WP_212100259.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357668..368066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS01750 (KEF49_01750) - 357839..359041 (+) 1203 WP_212100250.1 GTP-binding protein -
  KEF49_RS01755 (KEF49_01755) - 359105..360241 (+) 1137 WP_071348421.1 zinc-dependent alcohol dehydrogenase -
  KEF49_RS01760 (KEF49_01760) - 360256..360690 (+) 435 WP_013350964.1 RDD family protein -
  KEF49_RS01765 (KEF49_01765) - 360763..361086 (+) 324 WP_212100253.1 YckD family protein -
  KEF49_RS01770 (KEF49_01770) - 361191..362627 (+) 1437 WP_212100256.1 family 1 glycosylhydrolase -
  KEF49_RS01775 (KEF49_01775) nin/comJ 362668..363066 (-) 399 WP_212100259.1 competence protein ComJ Regulator
  KEF49_RS01780 (KEF49_01780) nucA/comI 363087..363524 (-) 438 WP_212100261.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KEF49_RS01785 (KEF49_01785) hxlB 363874..364431 (-) 558 WP_212100263.1 6-phospho-3-hexuloisomerase -
  KEF49_RS01790 (KEF49_01790) hxlA 364428..365063 (-) 636 WP_212100265.1 3-hexulose-6-phosphate synthase -
  KEF49_RS01795 (KEF49_01795) - 365295..365657 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14912.89 Da        Isoelectric Point: 4.4508

>NTDB_id=559559 KEF49_RS01775 WP_212100259.1 362668..363066(-) (nin/comJ) [Bacillus amyloliquefaciens strain Ba13]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNAKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=559559 KEF49_RS01775 WP_212100259.1 362668..363066(-) (nin/comJ) [Bacillus amyloliquefaciens strain Ba13]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATTTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATGCGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAACGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATCGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758